Primulina eburnea: 140815129
Help
Entry
140815129 CDS
T11060
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pebu Primulina eburnea
Pathway
pebu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pebu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140815129
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pebu03019
]
140815129
03012 Translation factors [BR:
pebu03012
]
140815129
Enzymes [BR:
pebu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
140815129
Messenger RNA biogenesis [BR:
pebu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
140815129
Translation factors [BR:
pebu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
140815129
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
nSTAND3
ATPase
AAA_19
T2SSE
AAA_16
AAA_23
ABC_tran
PhoH
Myosin_head
Motif
Other DBs
NCBI-GeneID:
140815129
NCBI-ProteinID:
XP_073030341
LinkDB
All DBs
Position
15:complement(30353277..30378435)
Genome browser
AA seq
1167 aa
AA seq
DB search
MRSRLGGFLARTARKSWNHSHLSSTFLFPLNPDIINVLYAGNRACLCNFTENFRRFKLQK
LSSDPVIFRSGFCGYAAEQFSDDEYECDYENHPASSSVVNIDEWKWKLSMLSRNDKDQEI
VSRDKRDRRDFEQIARLAKHMGLYCELYGKVVVASKVPLPNYRPDLDDKRPQREVVIPLS
LQRRVEGLLQEHLDRTLLNSEKADPSLSELDTKNHVENANTDENAESFLDASVMEKVLQR
QSLRMRNMQRTWQESPEGNRMLDFRRSLPTFREKERLLQAIARNQVIVISGETGCGKTTQ
LPQYILESEVESGRGAFCNIICTQPRRISAMAVAERVSAERGEPLGETVGFKVRLEGKKS
KNTHLLFCTSGILLRRLLSDRNLADVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRL
ILMSATLNADLFSDYFGGAPMIHIPGFTYPVTAHFLEDILEMTGYKLNSFNQIDDYGQEK
MWKTQRQLAPRKRKNQITTLVEEALNKSNFENYSSAVVESLSCWAPDCIGFNFIEAVLCH
ICRKERPGAVLVFMTGWEDISCLRDQIKAHPLLGDPNRVLLLICHGSMAISEQRLIFEKS
PPNVRKIVLATNMAEASITINDIVYVVDCGKAKETTYDALNNTPCLLPSWISQASARQRR
GRAGRVQPGVCYHLYPRCVYEAFAEYQLPELLRTPLNSLCLQIKSLQVESTIDFLSAALQ
PPEPLAVKNAVEFLKMIGALDESENLSPLGKFLSVLPVDPKLGKMLVMGSIFSCFDPVLT
IVAGLSVRDPFLLPQDKKDLAGSAKSRFSAKDYSDHMALVRAYEGWKEAEREGSAYEYCW
RNFLSVQTLQAIHSLRKQFTYILKDAQLLDEDGSINNRLSHNQSLVRAVICSGLYPGIAS
VVHRETSMSFKTMDDGQVFLYANSVNARYQTIPYPWLVFGEKVKVNTVFIRDSTGISDSI
LILFGGGIDCGGMAGNLKMLSGYIDFFMDPSLSECYVKLKEELEKLLQKKLQDPCLDINK
EGKYLMLAIQELVSGDQSEGRFVFGRESKKPRESGDRERFTQDGTNPKSLLQTLLMRAGH
SPPKYKTKHLKTNEFRALVEFKGMQFVGKPKRNKVLSEKDAAIEALAWLTQTSEDNHDED
NKSLPDVTDSMLKLLGKRRRSKRGRSG
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgcgttcccggctcggaggctttcttgcacgtactgctagaaaatcgtggaatcactcg
catctttcttcaacattcctattcccgctgaacccagatatcataaatgtcctatatgcc
ggcaatcgtgcttgtttatgtaattttacggaaaattttcgtaggtttaagctgcagaag
ttaagtagcgatcctgttatttttcggagcgggttttgtggctatgccgccgagcagttc
tctgatgatgagtacgaatgtgattatgaaaaccacccggcgtcatcatcagtggtgaac
attgatgagtggaaatggaagctgagcatgctgtcacgtaatgataaagatcaagaaatt
gtgtctagagataaaagagacaggagagactttgaacaaatagccagacttgctaaacac
atggggctttactgtgaactgtatggtaaagtggtagttgcaagcaaggttcctcttcct
aactacagaccagatttggatgacaagcgccctcaaagggaggttgtgatcccattgagc
ttgcaaaggagggtggagggtttgctccaggaacatcttgacaggacattgctgaactct
gaaaaagcagatccttctttgagtgaattggataccaaaaatcatgttgaaaatgcgaat
actgatgaaaatgccgagtcattcctcgatgcttctgttatggagaaagttctccagagg
cagagtttgcgcatgcgtaatatgcagagaacttggcaggagtcacctgaaggcaacagg
atgctagattttagaaggtctctccccaccttcagggagaaggaaaggctccttcaagct
atagctcggaatcaggttatagtgatttctggggagactggatgcggtaagaccactcaa
cttcctcagtatatattagagtccgaggtagagtctggtcggggagcattctgtaacatt
atttgcacgcagcctcgaagaatatcagccatggctgtagcagaaagagtctccgcagag
aggggagagcctcttggtgaaacagttggatttaaagtacgattagaaggcaagaaaagc
aagaacacgcatttgcttttttgcaccagtggaattttgcttcgcaggctcttgagtgat
cgcaacctggctgacgtaactcatgtttttgtggatgaaatccatgagcgaggcatgaat
gaagactttttgttgattgtcttgaaggatcttcttccaagacgtcgggatttaaggttg
atcctgatgagtgccactcttaatgctgatctgttttctgattatttcggtggcgcacca
atgattcatattcctggcttcacatatcctgtaacagcacactttctggaagatattctg
gagatgactggatataagttgaattcattcaaccaaatagatgattatggccaagagaaa
atgtggaaaacacagagacaactagcaccacgaaaaagaaaaaaccaaatcaccactctt
gttgaggaagccctgaataaatcaaactttgagaactatagttctgcggtcgttgagtca
ttgtcatgctgggcacctgattgtattggattcaactttatcgaggctgtgttgtgtcat
atatgtcgcaaggagcgtccaggtgctgtcttggtatttatgactgggtgggaagacata
agttgtttgagggatcaaataaaagctcaccctctcttgggggaccccaacagggtcttg
cttcttatatgccatgggtcaatggccatctctgagcagagactcatctttgagaaatca
cctcccaatgttcgcaaaattgtacttgcgacaaacatggctgaggctagtataacaatt
aatgacatagtttatgtcgttgactgtggaaaagcgaaggagactacttatgatgcctta
aataacacaccttgtttactaccttcgtggatatcccaagcttccgctagacagagaagg
ggtagggcaggtcgtgtgcagccaggcgtgtgctaccacttatatccaagatgtgtttat
gaagcttttgctgaatatcaacttcctgaacttctaagaactccacttaattctctctgt
ctgcaaattaaaagtttgcaagttgaaagtactatcgattttttgtctgctgctcttcag
cctcctgaacctttggcggtgaaaaatgctgttgaatttttgaagatgattggtgctttg
gatgaaagtgagaatctttcacctcttggaaagttcttgtcagtgctaccagtggatcct
aagctcgggaaaatgctagttatgggttctatatttagttgctttgaccctgtactaacg
attgtggccggtctcagtgtcagggatccttttcttctacctcaagataaaaaggattta
gcaggctctgccaagtctagattctctgctaaggactacagtgatcatatggctcttgtt
cgtgcctatgaaggatggaaggaagcagaaagagaaggttctgcatatgaatattgctgg
agaaacttcctttctgtccagactcttcaagctatccattctcttcgtaagcagttcact
tacattttgaaagatgctcagttgcttgacgaagatggatcaatcaataacagattaagt
cacaaccagtctttggttcgtgctgtaatatgttctggtctataccctggaattgcttct
gttgtgcacagggaaacatcgatgtctttcaagacaatggatgatggccaggtttttctc
tatgcgaattctgtaaacgctcgttatcaaacaatcccatacccatggttggtttttggt
gagaaggtgaaagtcaatacagtattcatacgtgattcgactggaatatctgattccatt
ttgatcctttttggtggtggcattgactgtggtggtatggcaggcaatttaaagatgttg
agtggatatattgacttcttcatggatccgagtttgtcagagtgttatgtcaagctgaaa
gaggagctcgaaaagcttttgcaaaagaagcttcaagatccctgcttggatatcaataaa
gaaggaaagtacctaatgcttgctattcaggagctggtttcgggtgatcaaagtgaagga
agatttgttttcggtcgtgaaagtaagaagcctcgagagtctggtgatcgcgaaagattt
acacaagatggtacaaatcccaagagcttacttcaaactctgttaatgagagctggccat
tcacctccgaaatataaaacaaaacatctcaagacaaatgaatttagggcgttagtggag
ttcaagggcatgcagtttgtgggaaaaccgaagagaaataaagtcttgtctgagaaagat
gcagctattgaagcgttggcttggttaacccaaacttctgaggataaccatgatgaagat
aataaatctctgcctgatgttactgacagcatgctgaaacttcttggcaaacgaaggagg
tcaaaacgggggcgatcaggttga
DBGET
integrated database retrieval system
