Primulina eburnea: 140815385
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Entry
140815385 CDS
T11060
Name
(RefSeq) protein PAT1 homolog
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
pebu Primulina eburnea
Pathway
pebu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pebu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140815385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pebu03019
]
140815385
Messenger RNA biogenesis [BR:
pebu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
140815385
mRNA degradation factors
5'-3' decay
Decapping complex
140815385
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
140815385
NCBI-ProteinID:
XP_073030611
LinkDB
All DBs
Position
15:complement(35829243..35834875)
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AA seq
803 aa
AA seq
DB search
MDNYGDGGSIQESSNLQDLQPFAANPTGHAVFDASQYAFFGNNAVEEVELGGLEDDEDDL
GAVGFNEEGLQLEREEGDAFGSLSGIDDISITFSKLNIAVSGPAGVVGDWGPRESSSAAE
WAQEGDFSWFDRQALDTETGHGTENWSSQPYSSARVMESNSLLRTSSHPEPQQHPHQQQN
QHNHFSSEPILIPKSAFTSYPPPGRLQQDSPNGQSIHANIMYQPGGLQIPISSSNILPFP
NPHLQLNTSTHASQFGGNLPQMPHGRLQNQWMNQSSQFLGDRSGLPNNVLPQPLSNQNGL
VPPQIMSHQRTLQTRMHHPFQPAFTQLSGLQPQLFNPHLSVSPPMMNNFEMIGSPDLRDQ
RAMPMMRSRQGMRYPPQGYDTSGQKVQSGWPRFKGKYMSTDEIENVLRLQLAATHSNDPY
VDDYYHQACLARKSEDAKLRHHFCPTNLSDGPARARSSAEPHPFLQVDALGRVSFSSIRR
PRPLLEVDSSNSSCVVGAESKFTEKPLEQEPMLAARVTIEDGICLLLDVDDIDRFLQFNQ
LRDGGVLLRQRRQVLLEGLASSLQLVDPLGKNGHTVDLAPKDDFVFLRLVSLPKGRKLLL
RYLQVLLPGELTRVVCMAIFRHLRFLFGNVPTDPETFASTANLAIAVSSCVRGMELNSLA
ACLASVVCSVEHPPLRPTGSPSGDGATVLLKSVLDRATKLLTDPQAAGNCSIPNRSFWQA
SFDAFFSLLTNYCFNKYDSVVQSVIQGSPDTPDVGSDVAKAISREMPVELLRASLPHTNE
QQRKLLLEFSQRSMPVLGSSSQV
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atggataattacggagatgggggcagtattcaagagtcctccaatcttcaggatcttcaa
ccatttgctgcaaatccaacaggacatgcagtatttgatgcttcacagtatgcattcttt
ggtaacaatgcggtggaggaagttgagctcgggggattggaagatgatgaggatgatctt
ggtgcagttggattcaatgaagaggggcttcagcttgagagagaagagggtgatgcgttt
ggatcactatctggcattgatgatatttcaatcacattttctaagttgaacatagctgtc
agcgggccagctggagtagttggagactggggacctagagaaagctcatctgctgctgag
tgggcacaggagggagatttctcttggtttgatcgacaagctcttgatactgaaactggc
catggtactgaaaactggtcctcacaaccatattcctctgcacgtgtcatggaatccaat
tctctgctcaggacatcttcacatcctgaaccgcagcagcatccacatcaacaacaaaac
caacacaatcacttttctagtgagccaattctaattccaaaatcagcattcacttcgtat
ccaccacctggcagattacagcaagattcaccaaatggccagtctatccacgctaatatt
atgtatcaacctggtggtttgcaaataccgatttcttcttccaatattttaccgtttcct
aatccgcatcttcaattaaatacctcgactcatgcgtcacaatttggtggaaatttgcct
cagatgcctcatggtcgactccaaaatcaatggatgaatcagagtagtcaatttcttggt
gatcggtctggtctcccaaataatgttttaccccaaccattatcgaatcaaaatggttta
gtgcctccgcagataatgtctcaccaacgtactttgcaaactagaatgcaccatccattt
cagcctgcctttacccaattatctgggttgcaacctcaactttttaatcctcacttatct
gtgtcgccaccaatgatgaacaactttgaaatgattggatcccctgatttgagagatcaa
agggccatgccaatgatgagaagtagacagggaatgcgctatcctcctcagggttacgac
acaagtggccagaaggttcagagtgggtggccaaggttcaagggcaagtatatgtctaca
gatgaaattgaaaatgttcttaggttgcagcttgctgctactcatagtaatgatccatat
gttgatgattattatcatcaagcttgcctagcaagaaaatctgaggatgccaaattgaga
catcatttctgcccaactaatttgagtgatggacctgccagagctcgttctagtgctgag
ccacatccttttctccaggttgatgctcttggacgggtttccttctcttcaatacgcaga
cctcgaccgcttcttgaagttgactcctcaaattcatcttgtgtcgttggggctgaatca
aaattcacggagaagcccctggaacaggaacctatgcttgctgccagggtgactattgag
gatggcatctgccttttacttgatgttgacgatattgacagatttttacagtttaatcaa
ctgcgtgatggtggggtcctgttgaggcagaggagacaagttttactggaaggtttagca
tcatcacttcagcttgttgatccgctagggaaaaatggccacaccgtagatttagctccc
aaagatgactttgtgttcttaaggttagtctctcttcctaagggtaggaagcttttgttg
aggtatcttcaagttcttttgccaggcgaactcactcgagtagtctgcatggccatcttc
cgccatttaaggttcttgtttggtaatgttcctactgatcctgagacttttgcatcaact
gcaaaccttgcaatcgctgtatcatcatgtgttcgtggtatggaacttaattctcttgct
gcctgtctcgcttcagtggtatgttcggtggagcatcctcctcttcgtcccactgggagt
ccttctggagatggagcaacagttcttctgaaatctgtccttgatagggcaactaagctt
ttgactgaccctcaagctgctggcaactgcagcataccgaaccggtctttttggcaggct
tcatttgatgccttctttagccttcttactaactattgctttaataaatatgactctgtt
gttcaatctgtcatccagggctcaccagacacacctgatgttgggtctgatgtagccaaa
gcaattagtagagaaatgcctgttgaactgttgcgagcaagtcttcctcacactaatgag
cagcagagaaaacttctgttagaattttcccagcgatctatgcctgttttgggttctagc
agtcaggtttga
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