Primulina eburnea: 140816209
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Entry
140816209 CDS
T11060
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pebu Primulina eburnea
Pathway
pebu03013
Nucleocytoplasmic transport
pebu03015
mRNA surveillance pathway
pebu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pebu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140816209
09122 Translation
03013 Nucleocytoplasmic transport
140816209
03015 mRNA surveillance pathway
140816209
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pebu03019
]
140816209
03041 Spliceosome [BR:
pebu03041
]
140816209
Enzymes [BR:
pebu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
140816209
Messenger RNA biogenesis [BR:
pebu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
140816209
Spliceosome [BR:
pebu03041
]
Complex C
Other components
EJC/TREX
140816209
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
140816209
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
140816209
NCBI-ProteinID:
XP_073031410
LinkDB
All DBs
Position
16:complement(4530538..4535008)
Genome browser
AA seq
428 aa
AA seq
DB search
MGENKDNDAYEEELLDYEEEDEKAADSVTAKVNGETAKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPISGQVAALV
LCHTRELAYQICHEVERFSTYLPDIKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILA
LARDKELSLRNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVT
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagagaataaggacaacgacgcttacgaagaggagcttctcgactacgaggaggaa
gacgaaaaggcagcagactccgtcaccgccaaagtcaacggcgagaccgccaagaagggt
tatgtaggcattcacagttcaggattcagagatttcctcttgaagccagagcttttacgg
gctattgtggattctggatttgagcatccgtcagaagtgcaacacgaatgcatacctcaa
gctattttgggaatggatgttatttgccaagcaaaatccggtatggggaaaactgctgtg
tttgttctctcaacattgcagcagattgaacctatttcaggtcaagttgctgctctcgtt
ctgtgtcatacaagggaattggcttaccagatctgtcacgaggttgagcggttcagcaca
tatttaccggatatcaaagttgctgtattttatggtggtgtcaacattaaagtccacaag
gatctcttgaagaatgaatgccctcacattgtcgtgggaacacctggaaggatacttgct
ctggcaagagataaggaactttctttgaggaatgtgaggcatttcattctggatgaatgt
gataagatgctcgagtcccttgatatgaggagagatgttcaggagatctttaagatgaca
cctcatgataaacaagttatgatgttctcagccacactcagcaaagagattcgaccagtt
tgcaagaaattcatgcaagatccaatggaaatctatgtggacgatgaggccaagttgacc
ctccatggtcttgtgcagcactacatcaaattaagtgagctggagaaaaaccggaagctg
aatgatctactcgatgcattggacttcaatcaagttgtcatttttgtcaaaagcgtcact
agagctgccgagcttaacaagttgctcgtggagtgtaatttcccatctatttgcattcat
tctggcatgtctcaggaagaaagattgactcggtacaagggattcaaagaagggcacaag
agaattctagttgcaacagatctggtgggaagaggaatagacattgaacgggtgaacatt
gtgattaactacgatatgcctgattcagctgacacttatctccatcgggtgggtagagct
gggcgatttggaaccaaaggacttgccatcacgtttgtttcttctgcatccgattcagat
gttcttaatcaggttcaggagagatttgaagttgacatcaaagagcttccagagcagatt
gatacatctacatacatgccatcttga
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