Primulina eburnea: 140817082
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Entry
140817082 CDS
T11060
Name
(RefSeq) 5'-3' exoribonuclease 3-like isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
pebu Primulina eburnea
Pathway
pebu03008
Ribosome biogenesis in eukaryotes
pebu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pebu00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
140817082
09123 Folding, sorting and degradation
03018 RNA degradation
140817082
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pebu03021
]
140817082
03019 Messenger RNA biogenesis [BR:
pebu03019
]
140817082
03009 Ribosome biogenesis [BR:
pebu03009
]
140817082
03016 Transfer RNA biogenesis [BR:
pebu03016
]
140817082
Transcription machinery [BR:
pebu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
140817082
Messenger RNA biogenesis [BR:
pebu03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
140817082
Ribosome biogenesis [BR:
pebu03009
]
Eukaryotic type
Pre-60S particles
RNases
140817082
Transfer RNA biogenesis [BR:
pebu03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
140817082
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
140817082
NCBI-ProteinID:
XP_073032753
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All DBs
Position
16:complement(13492415..13511447)
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AA seq
872 aa
AA seq
DB search
MGIPAFYRWLCNTFPDAVVDVTEDPPIFINGVKVPVDTTRPNPNGMEFDNLYLDMNNIIH
PCFHPENLASPESYDQVFKSVFKYVDRIFSLIRPRKLLYMAIDGVAPRAKMNQQRARRFR
TAKDAADEASITDKLRGSCTKEGTAWGIEGLDSNVITPGTEFMELLSSALRYYINLRMNH
DPGWQGIKVILSDASVPGEGEHKIMSYIRLQRNIPGFDPNTRHCLYGLDADLIMLGLAAH
EVHFSILREVSRKHKGPKRKNKAEVHNLKQRAGPYRQLESHLAGQKFQFFNLWILREGLA
EHLKIPNPRVKVDTERLVDDFVLMCVFVGNDFIPHVPSLDISEGAISLLMRVYRKEFIRM
GGYLTDSFEVNLERLEHFLQVISSREVSTLGCGGRSKEHQKWAMGLDPSLITEKESVISS
NHVASEARILDKVKLGDVGWKERYYDEKFEVQTAEDRESLTKHAVLKYVEGICWVMHYYY
EGVCSWQWFYPYHYAPFASDFHSLGQLKIHFSLGKPFKPFSQLMGVLPAASGQALPLFYR
KLMIDPSSPILDFYPTDFELELNVGKPAWQAICKLPFIDECRLLNEISKVQHTLTDEEKW
RNTLGLDRLFVHESHPLAAKISAFSERNKNNPKLNKVKVKRKINPKSSSGMNGYIYLSNK
PICPADISSPFCDMEMIMKNRVISVFYKFPTFHPHISRLPKGVAMPEMSISRHELLLPSF
IRRKRKAIDHRRFARRPSIPPPPLGGRSTVAISAQPLDAESALASSHPFVAGSSPSDVLS
RPLPPTPLRSRVRPMMAISYQYLVAESASASSQTSVAVSSPADTHSFVAGSSSASTHGDR
RIPKRSRSQKRRDQRKRRKLHATATQQIICPV
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atgggaatcccggcgttttaccggtggttatgtaatacgttcccggatgcagtagtcgac
gtgacggaagatcctccgatctttattaacggcgttaaagtccctgttgataccacgagg
ccgaaccccaatggcatggagttcgacaatctctatctcgacatgaacaacattattcac
ccctgctttcatcccgaaaatttggcttctccggagagttatgatcaagtgtttaagtcg
gtgttcaagtacgttgatcgaatattttcattgattaggcctcgcaagcttctgtacatg
gccattgatggtgtggcaccgagggccaagatgaatcagcagcgtgctagacgattcaga
accgctaaagatgcggctgatgaggcctcaataacggataaactgagaggtagctgcaca
aaggaaggtacagcttggggaattgaaggtttagattcaaatgtaattacccctgggact
gaatttatggaattactgtcatctgctcttcggtattatataaatttgaggatgaaccat
gatccaggttggcaagggatcaaggtgatactttctgatgccagtgtccctggtgaagga
gagcataaaattatgtcttacattcggctgcaaagaaatattcctggattcgatccaaac
acacgacattgtttatatgggctggatgcagatttgatcatgcttggtttggctgcccat
gaggttcacttctctattctaagagaggtttctagaaaacacaaaggtcccaagaggaaa
aataaagcagaagttcataacttgaagcaacgtgccggtccgtatcgacaactggaatcc
catttagcgggacaaaaattccagtttttcaatttgtggatactgagggaaggattggca
gaacacctgaaaataccaaatccaagagttaaagtagataccgagcgattagtagatgat
ttcgttctcatgtgtgtatttgtcggaaatgactttataccacatgtgccatcattagat
atatcagagggagctatcagcttgcttatgcgtgtctacagaaaagagtttattcggatg
ggtggttaccttactgattcttttgaggtaaatttggaaagattggaacactttttacaa
gttatttcttcacgcgaggtttcaactttaggatgcggaggaagaagcaaagaacatcag
aaatgggcgatgggactggacccatccctgataactgagaaagagagtgtcatttcctcc
aatcatgtggcttctgaagctaggatcctggacaaggttaaattaggagatgttggttgg
aaggagagatactacgatgaaaaatttgaggttcaaacagctgaagaccgtgagagtctt
actaaacatgctgtcttgaaatatgttgaagggatctgttgggttatgcattattattat
gaaggagtatgctcctggcaatggttttatccctaccattatgctccatttgcttctgat
tttcatagtcttggccagctcaaaatccatttttccctgggaaaaccctttaaacctttc
agccaattaatgggtgtgctccctgctgccagtggacaagcacttccattgttctacagg
aaattaatgattgatccatcatcccctattttggatttttatcctactgactttgagctc
gaattgaatgtggggaagccagcttggcaggctatttgtaagctaccttttattgatgaa
tgccggcttcttaacgaaatttcaaaagtgcagcatacattgacggatgaagagaagtgg
aggaacactttgggccttgatagactttttgttcatgagtcacatcccttggcggcaaaa
atatctgccttctcggagcggaataaaaataatccgaagttgaataaagtaaaagtgaag
aggaaaattaatcctaaatccagtagtggaatgaatggttatatctacctctccaataag
cccatttgtcctgctgatatctcttcccctttctgtgacatggagatgatcatgaaaaat
agagtgatatcggtcttctacaagtttccgacttttcatcctcacatctcgagactacca
aaaggagtggccatgcctgaaatgtctatcagcaggcatgaattgctacttccaagtttc
attaggcgcaagagaaaggctattgatcaccgcaggtttgccagaaggccctcaataccc
cctcctcctttgggaggacggtctacagtagcaatatcagcccaacccttagatgctgaa
tctgctttagccagctctcatcccttcgttgctggctcctccccctccgacgtcctatcc
aggcccttaccacctactcccttacgatcccgagtacgacctatgatggcaatatcttat
caatacttagttgctgaatctgcctccgccagctctcagacctcagtagctgtatcctcc
ccagccgatactcattcctttgttgctggatcatcctcggccagcacccatggagaccgt
cgaatacccaaaagaagtagatctcaaaagaggagggaccaacgtaaaaggagaaaattg
catgccacagcaacacagcaaattatatgtcccgtgtga
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