Primulina eburnea: 140818190
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Entry
140818190 CDS
T11060
Name
(RefSeq) DNA damage-binding protein 1a-like
KO
K12830
splicing factor 3B subunit 3
Organism
pebu Primulina eburnea
Pathway
pebu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pebu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140818190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pebu03021
]
140818190
03041 Spliceosome [BR:
pebu03041
]
140818190
03036 Chromosome and associated proteins [BR:
pebu03036
]
140818190
Transcription machinery [BR:
pebu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
140818190
Spliceosome [BR:
pebu03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
140818190
Complex B
140818190
Complex C
U2 SnRNP specific factors
140818190
Chromosome and associated proteins [BR:
pebu03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
140818190
TFTC complex
140818190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Motif
Other DBs
NCBI-GeneID:
140818190
NCBI-ProteinID:
XP_073034176
LinkDB
All DBs
Position
17:1105383..1114672
Genome browser
AA seq
1396 aa
AA seq
DB search
MAVSEYESSSSSASARQNANRNSRSSSCNDASSCYLAKTLLRGSVVLQAVRGHFRSSASY
DVVFGKETSIELAIIDEDVVMQSITEQPVFGTIKDIAVLPWNERFQAQSSKLRGKDILLV
ISDSGKLSFLSFCNEMHRFFPLTHLQLSAPGNSRHEVGRMLTVDSSGCFVAASAYEDQLV
IFSLSFSSNGQIIDKRISCPPEKDEFLQTDRGSTNISGTIWSMCFISKENSQPGKEYKPV
LAILLNRNVWGSSYRNELLLLEWNIEEHAIHVLYKFAEAGPLAHHIVEVPHVHGYAFLFR
AGDVVLMDFRNAHNPSCVYRTSLNFTPFEGKKYEHVGIPDIMDEECTCSIAASALLELSD
INKYDDPMNIDDYSSVKPGFNYVCSWSWEPGDSYIPRIIFSADSGDIYAMEVLFESDRIR
VNLSASLCRGLPSKALLWLDGGFVATIVDMTDGMVLKFEEGLLCHRSPIQNIAPILDMTF
VDYPEEKFDQMFACSGMAPEGSLRIIRSGISVEKSLKTAPIYQGITGTWTLKMEASDPYH
SFLVLSFIEETRVLSVGISFSDVTDTVGFQPDVCTLACGLVANGVMVQIHQYGVRLCLPS
GAVHRKGITLVSPIWTSWFPDNMSISLGAVGDGIILVATSSPCFLFILGIRASLTHHYEV
YEIQCVKLQNEVSCFSIPQKHLELNKSLVNYGDNHHMAPLTNGNNDYMFVIGTHKPSVEV
VSFTCDKGLQIFAIGFISLTNTMGAAISGCVPQDVRLVFVDRLYVLSGLRNGMLLRFEWP
VTSTLSSARSSCQQSAVGSCMVNTQATWKYTSPNHKVLPISISNASGKAKGEFPINLQLI
AVRRIGITPVFLVSLGDSLDADVIALSDRPWLVHTARHSLSYTSISFQPSTHVSPVCSVE
CPGGILFVAENSLHLVEMVPSKRLNVQKFHLGGTPRKVLYHNESKLLLVMRTDLDNDSCS
SDICYVDPVTGSLFSSFKFEFGETGECMNLVKVGNEHVLVVGTSLSACPDIMPSGEAEST
KGRLVVLCLERMQYSDSGSATLCSKTGSSSDQNPSFCHVGGCAAEQLSSSSLCSSLEDNS
CDGIILEETEAWKLRLAYSTIWPGMVLAVCPYLDRYFLASAGSSFYVCSFPNDNSQRVRR
LAVGRTRFTIMTLTAHFTRIVVGDCGDGILFYLYHEDSRKLELVNCDPVQWLVGDCMLMD
VDTAVVSDCKGSIAVVSCANHLEDEASPERNLTVSCSYYMGEISMSIRKGSFSYKLPADD
LTKDCDAASNVVNLTHNCFMASTLLGSIIIFIPFTREECALLEEVQSKLVIHPLTAPILG
NDHNEYRRRENLVGTPTILDGDILSQFLELTRMQQEAVLALPLASPSTVMLSFRTSMPVM
INQVVRLLERVHYAWN
NT seq
4191 nt
NT seq
+upstream
nt +downstream
nt
atggcggtttcggaatatgaatcttcctcttcatcggcatcagcaaggcaaaacgccaac
cgtaactcgcgatcgtcctcctgcaacgacgccagctcttgttatttggcaaagacatta
ctcagaggcagcgtcgttcttcaagctgtacgtggtcacttccgctcctccgcctcctac
gacgtcgtcttcggcaaggagacatcgatagaacttgcgataatcgatgaagatgtcgtt
atgcaatctatcaccgaacaacctgtgtttggtacgataaaagatattgcagttcttcct
tggaatgagagatttcaagcacagagttccaagttacgagggaaggatatattgcttgtc
atttctgattcagggaagctgtcgtttctttcattttgcaatgaaatgcacaggtttttc
ccattgactcatttacaactttctgctcctggaaactcgagacatgaagttggaaggatg
ttgactgttgattccagtggttgctttgttgctgccagtgcgtatgaggaccagttggtt
attttctcgctttcattttcctccaatggtcaaatcattgataagagaatctcttgtcct
cctgaaaaagatgaatttctgcaaactgatagaggatctactaatatctctggaactata
tggagcatgtgcttcatctcaaaagaaaactctcagcccgggaaggaatataagccagtt
ttggccattcttttaaataggaatgtttggggatcttcttatcggaatgaacttcttttg
ttggaatggaacattgaggaacatgcaatccacgtattatataagtttgctgaagctgga
cccttagcacatcatattgttgaagtccctcatgttcacggatatgccttcctgtttagg
gctggtgatgttgtcctgatggattttaggaatgctcataatccttcttgtgtttataga
acaagtttgaattttactccatttgagggaaaaaaatatgaacatgttggaataccagat
attatggatgaagaatgtacgtgtagcattgctgcgtctgcgttgttggagcttagtgac
ataaataaatatgatgacccgatgaacatcgatgattacagtagcgttaaacctggtttc
aactatgtctgctcatggagttgggaacctggtgactcatatattcccaggataattttt
agtgcagattctggagatatatatgcaatggaagttctttttgagtctgatcgcatcaga
gtaaatctatctgcttctctttgcagaggtttaccatctaaggctcttttgtggcttgat
ggtggatttgtggcaaccattgttgacatgactgacggaatggtattaaaatttgaagag
gggttattgtgccacagaagtccgattcaaaatattgcgccgatcttggatatgacattt
gttgattatcctgaagagaaattcgatcaaatgttcgcctgctctgggatggctcctgaa
ggatctttacgaatcattcgaagtggtatcagtgtggaaaaatcgttaaaaactgctcct
atttatcagggtattactggtacttggacattaaaaatggaagcatctgatccctatcat
tcttttcttgtactgtcattcattgaagaaaccagggtgctctctgttggcattagtttt
tctgatgtgactgatactgttggttttcagcctgatgtctgtactttggcttgtggtctt
gtggccaatggggtgatggtccagatccaccaatatggagtcagactatgtttgcctagt
ggagctgtacatagaaaaggtatcactcttgtatctcctatttggacttcatggttcccc
gataatatgtccataagtcttggagctgttggagatggtataatccttgtagcaacttcc
agtccgtgcttcttattcatccttggtattagagcttcattgacacatcattacgaagta
tatgagattcagtgcgtgaaattgcagaatgaagtgtcttgtttttccatacctcaaaag
caccttgagctgaataaatcattagtaaattatggagataaccaccatatggcgcctctt
acaaatggaaataatgactacatgtttgttatcggtactcataagccttcagtagaagtt
gtatcctttacatgcgacaaggggctgcaaatttttgctattgggtttatttcattaacg
aacaccatgggagctgctattagtggttgtgttcctcaagatgtaaggcttgtctttgtt
gatcgtctgtatgttctttcgggattaaggaatgggatgcttcttaggttcgagtggcct
gttacttctacactatcatcagctaggtcttcttgtcagcagtctgctgttggttcttgt
atggtgaatactcaggccacatggaagtatacatctccaaatcataaagtactaccaata
tccatttccaatgcatctggaaaggctaaaggagagtttccaattaatcttcagctgatt
gctgtgcgtcgtattggtatcacgcctgttttcttggtttccttgggtgattcccttgat
gctgatgtaattgctctcagtgataggccttggttagtgcatactgcaagacatagcctc
tcgtatacctccatctcctttcaaccttccactcatgtctctcctgtgtgttcagtggaa
tgccctggaggaattttatttgttgcggagaacagtctacatctggtggaaatggtgcca
agtaagaggcttaatgttcagaaatttcatcttgggggcacgcctagaaaagtgttatat
cacaatgagagcaaattattgcttgtcatgaggacggatttggataatgattcatgttca
tctgacatctgttatgtggatccagtgacgggcagtttattttcatctttcaaatttgaa
tttggggagacaggggaatgcatgaatcttgtgaaagttggaaatgagcatgtgctggtg
gttgggacgagcctatctgcttgtccggacataatgcctagtggtgaagctgaaagtaca
aaaggtcgtttggtggttctttgcctagaacgtatgcagtattctgacagtggttctgcc
acactatgttccaagactggttcatcgtccgatcaaaatccatctttctgccacgttggt
ggttgtgctgcagaacagctttcaagcagtagtctctgcagcagcctggaagataatagc
tgtgatggaatcatacttgaagaaactgaagcatggaaattgcgattagcttattcaacc
atttggcctgggatggtccttgccgtgtgcccttaccttgatcggtatttcttggcttct
gccggtagttctttttatgtttgcagttttccaaatgataactctcagagggtcaggaga
ttggctgttggaagaacgcgttttacaatcatgactttaactgcacatttcaccaggatt
gttgttggggattgtggtgatggtattcttttctatttgtaccatgaggattccagaaaa
ctggagctagtaaactgtgatcctgtccaatggctagttggtgactgcatgcttatggat
gtagatactgctgttgtttcagattgcaaggggagtattgctgtcgtgtcatgtgcaaat
catttagaagatgaggcaagtccagagcggaacttgacggttagttgttcttactatatg
ggggagatttccatgagtataaggaagggatcattttcgtacaaactcccagcagatgac
ctaacgaaggactgtgatgctgctagtaatgttgtaaatctgacacataactgtttcatg
gcatctactctgttgggcagcataataatcttcattccctttacaagggaggaatgtgcg
ttgctggaagaagttcaatctaagctggtgattcacccgcttactgctcctattttagga
aatgaccacaatgagtatcgaagacgtgaaaatctggttgggacacctacgatccttgat
ggtgacattctgagtcagttcctggagctaacaaggatgcaacaagaagctgtgttggca
ttgcctcttgcatcaccaagcactgtcatgttaagttttagaacgtctatgccagttatg
atcaatcaagttgtcagattacttgaacgagtacattatgcatggaactaa
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