Primulina eburnea: 140820262
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Entry
140820262 CDS
T11060
Name
(RefSeq) LOW QUALITY PROTEIN: DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pebu Primulina eburnea
Pathway
pebu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pebu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140820262
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pebu03019
]
140820262
03012 Translation factors [BR:
pebu03012
]
140820262
Enzymes [BR:
pebu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
140820262
Messenger RNA biogenesis [BR:
pebu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
140820262
Translation factors [BR:
pebu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
140820262
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
nSTAND3
AAA_16
T2SSE
AAA_19
ATPase
Motif
Other DBs
NCBI-GeneID:
140820262
NCBI-ProteinID:
XP_073036702
LinkDB
All DBs
Position
18:30725574..30736059
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AA seq
1186 aa
AA seq
DB search
MVFSSTFIQKSLKFKLGVMSMATRTHSPPLLVRGFCNLRPCGFLARKGVSFAAFSPVSIV
LRRHRNVSYIATATWSTSSSFSFPYTYEQSLGYGRSAYDEYLSEEESDREFGSSSKQQLG
DSTLDNVEEWRWKLTMLMRNKSEQEVVSRDKKDRRDFEQLSALAIRMGLHSGRYEKVVVF
SKLPLPNYRSDLDEKRPQREVMLPIGLQRRVESHLRAHLSRKAMTKQDTFLTSSAVRSLS
LDGLNEPEESSTQNVISETIVRRRSLQMHNKQQNWQESPEGQKMQEFRRSLPSYKEKDLL
LKVVSQNQVVVVSGETGCGKTTQLPQYILESEIDAVRGAACSIICTQPRRISAIAVAERV
AAERGEKIGESVGYKVRLEGMRGRDTRLLFCTTGILLRRLLVDRNLRGVTHVVVDEIHER
GMNEDFLLIVLKDLLPRRPELRLILMSATLNADLFSSYFGGAPMIHIQGFTYPVRSHFLE
SILEITDYRLTPYNQIDNYGQEKMWKMQKQALKKRKTQIASAVEEALLAADFKEHNYRIR
ESLSCWNPDSVGFNLIEHVLCHICRNERPGAVLVFMTGWDDINSLKDQLQAHPLFGDPSR
VLLLACHGSMASAEQKLIFERPEDGVRKIVLATNITETSITINDVVYVIDCGKAKETSYD
AINNTPCLLPSWISKASARQRKGRAGRVQPGECFHLYPRCVYDAFADYQLPELLRTPLQS
LCLQIKSLQLGSISDFLSKALQPPEPLSVQNAIQYLKIIGALDENENLTELGRNLSMLPV
EPKLGKMLIYGAVFNCLDPIMTIVAGLSVRDPFLMPFDKKDLAESAKAQFSARDYSDHLC
LVRAYDGWKDAEKERSGYEYCWRNFLSAQTLKAIDSLRKQFFYLLKDTGLIESEESCNSW
SGDEHIIRAVICAGLFPSVSFVVNKEKSILLKTMDDGAVLMHSNSVNAQESKIPFPWLVF
NEKVKVNAVFLRDSTGISDSAVLLFGGNICRGELDGHIKMLDGYLEFFMKPEMADTYLRL
NSELDEFVQKKLLNKKLDIQSYNELLSAVGLLVSEDKCEGRFVFGRQVSAXPSKKKSKET
RDLGSGGGDNAKSHLQTLLSRAGHQSPTYRTAQLKNNRFRSTVLFNGLDFVGQPCGSKKE
AEKDAAAEALRWLTGESQSSQETVDYMSTLLKKSKKKQQTSATRWR
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atggttttctcttcgacgttcattcagaaaagtttgaaattcaagcttggtgtcatgtct
atggcgactcgcacacactccccccctcttttggttcgcgggttttgcaacttgcgtcca
tgcggttttcttgcgcgaaaaggcgtgtcctttgctgctttttctcctgtttcaattgta
ttgaggcggcatcgaaatgtttcttatattgctactgctacttggtccacttcttcttcg
ttttccttcccgtatacttatgagcagagtttgggatacgggaggtctgcttacgatgag
tacctgtccgaggaggaatccgaccgtgaattcggatcgtcttctaagcaacagttgggt
gattcgactcttgataatgttgaagagtggaggtggaagttgaccatgcttatgcgcaac
aaaagtgagcaagaagttgtgtccagggataaaaaagatcgacgagattttgagcagctt
tcagcgttggcaatcagaatgggattgcacagtggtcggtatgaaaaggtagttgtattt
agtaaactcccattgccaaactacagatcagatttggatgagaagcgacctcagagggag
gtgatgctacctattgggttgcaaagacgggtagagtctcatcttagagcacacctttct
agaaaggctatgacgaagcaggatacctttttgacatcaagtgcagtccgtagcctttca
ctcgatggactaaatgagcctgaggagtcgtccacccaaaatgtaatatctgagactatt
gtcagacgaaggagcttgcaaatgcacaataaacagcaaaactggcaagagtctccagaa
ggccagaagatgcaagaatttagacgaagccttccatcgtataaagagaaagacttgtta
ctgaaagtcgtgtcccagaatcaggtggtagttgtctctggtgaaactggctgcggaaaa
actacacaactccctcagtacatcttagagtcagaaattgatgctgttcggggagctgca
tgcagtattatctgcacccaaccaagaagaatatctgctattgcggtggctgaaagggtt
gcagccgagcgtggtgagaagataggagaatctgttggttacaaagtgcggctggaggga
atgaggggtagagatactcgtctccttttttgtaccaccggaatccttttaaggagatta
ttggttgacagaaatttgagaggtgtaactcatgttgttgttgatgagattcatgagcgc
ggaatgaatgaagacttccttctaattgtcctgaaggatcttcttcctcgccgacctgag
ctgagactgattttgatgagtgcaaccctaaatgctgatcttttctcttcctattttggt
ggtgctcctatgattcacattcagggatttacgtatcctgttcggagtcatttcctggaa
agtattctagaaattactgactacaggttgacaccatataatcaaattgataattatggt
caagaaaagatgtggaaaatgcagaagcaagcacttaagaagaggaaaactcagatagct
tcagccgttgaggaagctcttcttgctgctgattttaaggagcataattatagaattcgg
gagtctctctcttgctggaatccagattctgttggctttaatctcattgagcatgtgctt
tgtcatatttgtcgcaacgaaaggcctggggctgtgctggtatttatgactggttgggat
gacataaattctttgaaagatcagcttcaagctcatccactttttggagatccgagcaga
gttctattgcttgcttgccatggttccatggccagtgcagagcagaaattgatttttgaa
agacccgaggatggggttcggaagattgttcttgcaacaaacataacagaaacaagtatc
accataaatgatgtagtttatgttatcgattgtggtaaagctaaggagacatcttatgat
gcgataaataacactccatgtttgcttccttcatggatctcaaaggcttctgctcgccaa
aggaaaggcagagcgggtcgtgtacaaccaggcgagtgtttccatctttaccctagatgt
gtgtatgatgcctttgcggattatcaactgccagaacttctgagaactcctttacagtct
ctctgcttgcaaatcaagagtctacaacttggaagtatttcagacttcctatctaaagcc
ttacaaccacctgaacctttatctgtccaaaatgccatccagtatttaaagataattggc
gctttagatgaaaatgaaaaccttacagaactaggacgcaacctgtccatgcttccagtt
gagccaaagcttgggaaaatgctcatatatggtgctgttttcaattgcttagatccaata
atgacaattgttgctggcttaagtgtcagagatccattcttgatgccatttgataagaag
gatctggctgagtccgcgaaggcgcagttttctgcacgtgactacagtgatcatctatgt
ctggtgagggcttatgacggttggaaagatgctgaaaaggagcgatctggatatgagtac
tgttggagaaattttctttctgcacagactctaaaagccattgattcccttaggaagcag
tttttttatcttcttaaagacaccggtttaattgaaagtgaggagagttgcaactcttgg
agtggtgatgaacatatcatccgtgcagttatatgtgctggcctgttcccttcagtaagc
tttgtagtgaacaaggagaagtcgatattattaaaaacaatggacgatggtgcagttctt
atgcattcgaattctgtgaatgcccaggaaagcaaaattccattcccgtggcttgttttc
aatgaaaaagtaaaagtgaatgcagtgttccttcgtgattcaactggaatatctgattcg
gcagttctcttattcggaggaaatatctgcagaggggaattggatggccatatcaaaatg
ctggatggatatctggagtttttcatgaagcctgagatggctgatacatatctgagattg
aatagcgagctcgatgaatttgtgcagaaaaagcttttgaataaaaaattggacatacag
agttataatgaacttctatcagcggtgggattattggtctcggaggacaagtgtgaagga
agatttgtgtttgggcgtcaggtttctgcanngccgtccaaaaagaaatcaaaagaaact
cgagatttaggaagtggtggtggtgataatgcgaaatctcacctccaaaccttacttagt
cgggctggacatcagtcacccacctacaggactgcccaactaaaaaacaacaggttcaga
tccactgttctattcaatggactggattttgttggccagccttgcggtagcaagaaagag
gcagaaaaagatgctgccgctgaggctctgagatggctcactggtgagagccaatcatct
caagagactgtagattatatgtctacccttctgaagaaaagcaagaagaaacaacagact
tctgctacaaggtggaggtaa
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