Primulina eburnea: 140822710
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Entry
140822710 CDS
T11060
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
pebu Primulina eburnea
Pathway
pebu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pebu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140822710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pebu03019
]
140822710
Enzymes [BR:
pebu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
140822710
Messenger RNA biogenesis [BR:
pebu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
140822710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
140822710
NCBI-ProteinID:
XP_073039660
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All DBs
Position
2:5426562..5431446
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AA seq
659 aa
AA seq
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MLALAFWAWRMSYHREHLVRALLKARTRTPPFTRSICCPPSASNTGLKNVTKSNFEPALA
ELRRHVKEADFVSIDLEMTGLTSAPWRESFEFDRADIQYLKVKDSAEKFAVVQFGVCPFR
WDPQAQSFVAHPHNFYIFPRQETPGECSSFEFLCQTSSLEFLAKYQFNFNACIYEGISYL
SRSQEEEALRRFDSIHQNDVSDSPSILRDVIDTQFVRMADVLFTERMKSKLSEWRTELLH
NKNGGSDILGSSNNLIQKFQTTFFQMRPAFMVNGLTSRQLRLIKLVTEKNFQDLVYVQVT
DETSGPQHLIVYTDSTTDRDNLMMEVKACHRKVAEKKIKAAIGFRHVIDLLSAERKLIVG
HNCFLDIMHVYRKFVGPLPSSADEFFSAVQMYFPYIVDTKVLLNADDVLFHIMKKGSTSL
SKAFTLLCPQIAFSVPVSGVVDKSRIRVEVQVDDQSFSNWNSGAKHEAGYDAFMTGCVFA
QACCHLGIDFNNQAPPVDLPGNEKLQKYINHLSLSWVNGDVVNLKTGKSDAESLGSNYHK
KNKKILFPNMVLFWGLTSELRAGDIRDCMHKVFGKDSVTSIYHLDDTAVFVQFSEAKLVS
DFLELKNSLDRENNPLTVLHPLSRILEGGCVRAASYETYKDICSSPLAEVLFSDQAEAV
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgctagcgttagcgttctgggcttggagaatgagctatcacagagaacatttggttcgg
gccctcttgaaggcccgaactcgtaccccaccgttcactcgctccatctgctgcccgcca
tcggcttcgaacacggggctgaagaatgtgacgaagtcgaacttcgaaccggctctagcc
gagctgcggcgccacgtgaaggaagcagacttcgtgtctatcgacttggagatgacgggg
ctcaccagcgcaccgtggcgggagtcgttcgagttcgaccgagccgatatacagtacctg
aaagtcaaagactcagccgagaaattcgccgtcgttcagttcggggtgtgtccctttcga
tgggaccctcaagcccagtccttcgtcgctcatccgcacaatttttacatatttcctcgg
caggaaactcctggtgaatgctcatcttttgagttcttatgtcagacatcctcactggaa
ttcttggcaaaataccagtttaatttcaatgcatgtatatatgaaggaatatcttattta
tccagaagccaagaggaggaagcgttgaggaggtttgattcaatacaccagaatgacgta
tctgattcgccatctatcttgagagatgtcatagatacacagtttgttaggatggcagat
gtactatttaccgagagaatgaagagtaaactcagtgaatggcgaactgaattattacat
aataaaaatggaggatctgacattttagggagttcaaacaacctgattcagaaatttcaa
actactttcttccagatgcgaccagcatttatggtgaatggcttaacttctcggcagctg
aggttgattaaattggtcactgaaaagaatttccaagatcttgtttatgtccaagtgact
gatgagacttctggtccacaacacttgatcgtctatacagattctacaacagatagggat
aatttaatgatggaagttaaagcttgtcacagaaaagttgcagaaaagaagattaaagct
gcaattgggtttcgacatgttattgatctcctttctgcagagagaaagttgattgttggt
cacaattgctttcttgatattatgcatgtttaccgcaaatttgtcggtcctcttccttca
tcagcggacgaatttttctcagctgttcaaatgtatttcccatacatagttgacactaaa
gtgttgctgaatgcggatgatgtgttgtttcatattatgaagaaaggcagcacatctctt
tcgaaagcatttaccttactctgtccacaaattgctttcagtgtcccagtcagtggtgtg
gttgacaaatcacgtattagagtggaagttcaagttgatgatcagagtttctcaaattgg
aactcgggggccaagcatgaagcaggatatgatgcttttatgaccggatgtgtttttgct
caggcatgctgtcatctaggaattgattttaacaaccaagcaccccctgtagatttacca
ggaaatgagaagctccaaaagtatatcaaccacctatctcttagctgggtgaacggagat
gttgttaatcttaaaacaggaaagtctgatgcagaatccttaggctctaattatcataag
aagaataagaagattttgtttccgaatatggtattattttggggactgacttcggaactt
agagcaggagatattagagactgtatgcataaagtttttggcaaggactctgtaacttcg
atttaccatttggatgacactgctgtctttgttcagttcagcgaagcgaaactagtttct
gactttcttgaattgaagaacagcttagatagagaaaataatccgctaactgttttgcat
cctttgtcgagaattttagaaggagggtgcgtccgtgctgccagttatgagacttataaa
gatatttgtagttctccattggcagaagtgctattttctgatcaagctgaggccgtttag
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