Primulina eburnea: 140823167
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Entry
140823167 CDS
T11060
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
pebu Primulina eburnea
Pathway
pebu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pebu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140823167
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pebu03041
]
140823167
Spliceosome [BR:
pebu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
140823167
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_TEP1_C
ANAPC4_WD40
PRP4
Beta-prop_WDR19_1st
NBCH_WD40
Beta-prop_EIPR1
Beta-prop_IFT122_1st
Beta-prop_DCAF4
WDR90_beta-prop_4th
Beta-prop_Vps41
Beta-prop_RIG_2nd
WD40_RFWD3
Beta-prop_SCAP
WD_LRWD1
WD40_like
Motif
Other DBs
NCBI-GeneID:
140823167
NCBI-ProteinID:
XP_073040452
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Position
2:complement(40292153..40296742)
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AA seq
574 aa
AA seq
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MDSDDKSTVSTSFTEASAPASDDEMVAMDTTSLRPAQPLIAPTILTPGFPPIAPIPVVPL
PIPRPLAPLPTHSTVIRPPLGQNGDSKASDSDSDQDESGYIRPPTGSNHEYEISEESRQV
RERQEKVMQELLMKRHAAAMTVPTNDGAVRTRLRRLGEPITLFGEREMERRDRLRALMAK
LDSEGQLEMLMKAHEDEEAAAMMAPAKPDEDIQYPFFTEGSQALLEARRDIAKYSIVKAA
LRLHRSRKKRDDPDEDLDAEIDWSLKQAEKLVLDSSEIGDDRPLSGCSISHDGKMLATCS
LSGVAKLWTMPEVNKVSALKGHSERATDVAFSPINYQLATASADRTARLWNPDGAVLRIF
EGHLDRLARIEFHPSGKYLGTASFDKTWRLWDVETGEELLLQEGHSRSVYGLSFHHDGSL
AASCGLDSLARVWDLRSGRSILALEGHVKPVLGLSFSPNGYHLATGGEDNTCRIWDLRKR
KSLYIIPAHSNLISQVKFEPQDGYLLVTASYDMTAKVWSSRDFKPVKTLSGHESKVTSLD
IMGDGQCIATVSHDRTIKLWTSKESEKEKAMEVD
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atggattctgatgacaaaagtacagtctctacttcgtttactgaggcttcagctccagct
tctgacgatgaaatggttgcaatggatacaacttctcttcgaccagcacaaccgctaatt
gcacccaccatcttaaccccgggctttcctcctattgccccaatacctgttgtgcctctc
ccaattcctcggccattagcgccactgcccacccactctactgtcattagaccaccttta
ggccagaatggagactcaaaagctagtgattcagattctgatcaagatgagtctggatat
attcgtcctcccacgggatcaaatcatgagtatgaaatctctgaagaaagcaggcaggtt
agagagaggcaagagaaagtgatgcaggaacttttgatgaagcgtcacgcggctgctatg
acagtcccaaccaatgacggagctgttcgaacccgactccgacggcttggtgaacctata
actctctttggggaaagggagatggagagacgtgaccgtttgagggcacttatggcaaaa
cttgattctgaaggccagctggaaatgctgatgaaagcacatgaggatgaagaagctgca
gccatgatggcaccagccaaaccagatgaagatattcagtatccctttttcaccgaaggt
tcacaagcacttttagaggcccgtagagatattgcaaaatattcgatagttaaagctgct
ttgcgccttcatcgttcaaggaagaaaagggatgatcctgacgaggatttggatgctgag
atagattggtctttgaaacaggcagaaaagttggtcttggattccagtgagataggtgat
gatcggcctctttctggatgctcaatttcacatgacgggaagatgcttgccacctgttct
ttaagtggggttgcaaagttatggaccatgcctgaagtaaacaaggtttctgcactaaag
ggccactcagaaagagctacagatgttgcattctctccaataaactatcaattggctacc
gcctctgccgataggaccgcaagattatggaatccagacggtgcagttctgagaatattt
gaaggtcatttggatcgtcttgctcgtatcgaattccatccatctggaaagtacttgggc
acagctagttttgacaaaacttggagattatgggatgtggagactggtgaggagttgctt
cttcaagaaggccatagcaggagtgtgtatggattgtcttttcaccatgatggctcatta
gcagcatcttgtggactggattctcttgctcgagtgtgggacctaaggtctgggaggagt
attcttgctctggaaggccatgtcaagccagttcttggcctcagtttttcgcccaacggt
tatcatttagctactggtggggaagataacacatgccgaatatgggacctgaggaaaaga
aaatctttgtacattatacctgctcattctaaccttatttctcaagtcaaatttgaacct
caggatggatacttattagttactgcttcatatgacatgactgctaaggtctggtcctcg
agagatttcaagcccgtgaagactttgtctggtcatgaatcaaaagtcacctcgcttgat
attatgggagatggacagtgtattgcgactgtttcacatgatcgaactatcaaattatgg
acaagtaaagaaagtgagaaagaaaaggcaatggaagttgactga
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