Primulina eburnea: 140823913
Help
Entry
140823913 CDS
T11060
Name
(RefSeq) probable pectate lyase 12
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
pebu Primulina eburnea
Pathway
pebu00040
Pentose and glucuronate interconversions
pebu01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pebu00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
140823913
Enzymes [BR:
pebu01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
140823913
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
140823913
NCBI-ProteinID:
XP_073041598
LinkDB
All DBs
Position
1:5608018..5613007
Genome browser
AA seq
486 aa
AA seq
DB search
MLFRNPIILFCLLAYICSSTAAGFLNLTVAHQHPNPDAVVQETQRKVNESISRRSILLST
PIIHDQSQCLTGNPIDDCWKCDSNWSNNRQRLADCGIGFGQSAMGGKGGRFYVVTDSSDH
DTVNPTPGTLRHAVIQDEPLWIVFQSNMVIKLKHELMFNSYKTIDGRGANVQITGNGCIT
LQYVSNVIIHNVHVYNCMPSGNTNIRSSPTHIGWRGKSDGDGISIFGSRNIWIDHCALSH
CTDGLVDAIMGSTGITISNNYFSHHDEVMLLGHDDKFLPDSGMQVTIAFNHFGEGLVQRM
PRCRRGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRYTAPTDPSAKEVTKRVDTNEGDW
SDWNWRTDGDIMVNGAFFVPSGGGLSLQYAKASSVEPKSVSLIDRLTMNAGVLGGPRDNA
VSISYGGGATTGGGGTGGGDYFGMNFAGGSVATLTSPTGALFLSLQFILILYVTNTNHGG
LLSLLL
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgcttttccgaaatcccattatcttgttttgtctcttagcctacatttgttcctcaacc
gctgctggattcttgaatctgaccgtcgctcatcaacaccccaaccctgatgctgttgtt
caagaaacgcagaggaaagtaaatgaatctatatcaagaaggagtatactgctttcaaca
ccaataatccatgatcagtctcaatgtctgacggggaaccccatcgatgactgctggaag
tgcgactcaaactggtcaaacaatcgtcagcgtctagccgactgtggtatcggatttgga
cagtcggcaatgggtggcaaaggcggccgcttttatgttgttacggattcctcagatcat
gatacagtgaaccctacccctggcacattacgtcacgccgtaattcaagatgaacccttg
tggatagtcttccaatcaaacatggttatcaagcttaaacacgagttgatgttcaatagc
tataaaacgatagatgggcgtggtgccaatgtgcaaatcacgggcaatggatgcattaca
ttgcagtatgttagtaatgtgatcatccacaatgtgcatgtttacaattgtatgccatca
gggaatactaatattcggtcgagtcctactcacattgggtggaggggaaaatcagacggc
gatgggatctcgatctttgggtccagaaatatctggattgatcactgtgctttgtcacat
tgtacagatggattggtggatgccattatggggtcaactggtattaccatttctaataac
tatttttctcaccatgatgaggttatgttgttaggacacgatgataagttcttgccagac
tccgggatgcaggtgacaatagcttttaatcactttggagaggggcttgtgcagaggatg
cctaggtgtaggagaggctacatacatgtggtgaacaacgattttacgcaatgggaaatg
tatgcaataggtggaagtggtaatcccacgattaatagtcagggcaatcgttatactgca
ccgacagatcctagtgctaaagaggttacaaaacgcgtggacacgaacgagggagactgg
tccgactggaactggaggacagacggggacataatggtaaatggtgcattctttgtgcca
tcgggcggagggctgagcttgcaatatgccaaggcctctagcgttgagcccaaatccgtg
tccctcatcgatagactcaccatgaatgctggtgttcttggtggccccagggacaatgct
gtgagcatatcatatggcggaggggccacgaccggaggaggcggcacgggtggtggtgat
tacttcggaatgaattttgcgggcggctccgtcgcgacactaacatctccgaccggtgca
ttgtttctgtctcttcaatttattctgattttgtatgtaaccaacaccaaccatggtggc
ctactgtctttacttctatag
DBGET
integrated database retrieval system