Primulina eburnea: 140825913
Help
Entry
140825913 CDS
T11060
Name
(RefSeq) tetratricopeptide repeat protein SKI3 isoform X1
KO
K12600
superkiller protein 3
Organism
pebu Primulina eburnea
Pathway
pebu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pebu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140825913
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pebu03019
]
140825913
Messenger RNA biogenesis [BR:
pebu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
140825913
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_11
TPR_14
TPR_16
TPR_8
TPR_17
TPR_19
TPR_CcmH_CycH
TPR_9
BTAD
TPR_NPHP3
mRNA_stabil
Motif
Other DBs
NCBI-GeneID:
140825913
NCBI-ProteinID:
XP_073044060
LinkDB
All DBs
Position
3:7591074..7605387
Genome browser
AA seq
1187 aa
AA seq
DB search
MLLKKEESVSVKKLEEEYMESKSESESLPADPSLHFNLGVSLWEKGEESQDIRGKAVEHF
MMAVKLDPQNGDAFRYLGHYYAHDSPMPLRALKCYQRAVFLNPDDSCAGEAICDMLDKEG
KESLVFAVCCEASEKSARAFWAFRQLGYLQAHQKKWSEAVHNLQHAIRGFPTCADLWETL
GLAYHRMGMLTAALKSYGRAIELEESRVFAWIESGNISLMLGSFRNGVEQFRNALRISPH
NVSAHFGLASALLGFAKECTNLGAFGWGAILLEEASAVATHGTSLASNVSCLWKLHGDIQ
LTYARCFPWTEEGLADETAFSSSISSWRRTCFLAASHASHFYQRALCLTPWQANIYADVA
IASDLISSLRVNPEEDLPVWPLAEKMCLGSILLEGHNEEFWMALGCLSDDIALKQHAFIR
GLQLDISLAVAWAYIGKLYRREGELQLAQQAFDRARSIDPSLALPWAGMSADAETRNLNE
NEAYECCLRAVQIFPLAEFQIGLAKLALNSGQLSSSEVFGAIKQALMRAPEYPESHNLNG
LVCESRSDYENAITSYKLARWALKSFAAESAEPCLKDISINLARSLCMAGHAEDAVEECE
YLRQKGQLSHEGLQVYALCLWKLNRYDTALSIARELGSRILTAEKNMAAASISFICRLLY
YISGSESAITSILKMPKEFFHSSKISFIVYAMHALDQKDRLDSVVSLSRACVTSHEEIIA
MHLLISLGKLVKHQQKDCLAFHESVRHLRKALHMYPNNSVLRNLLGSLLLSSKEWRDLGL
ATRCPIIDLSNQHKKDEGMKSACEIIGAGTVACFDTKNGNENFAALTCRHQLPFQSGIIK
LQQKFLHQEPWNFNARYLLTVNYFMKARESRFPPHICRVLARLTSVALSHRLCLSKYICL
QYQYFQLLLCSAELNLQQGNTGECVEHARSALGVSVDNSCLFFAHLLLCRAYAAENDIVS
MSKEYRQCLELKTDFHIGWICLKFIESRYKLQNDLGISHLSFEDCFKDMELSWNMWMGIF
NLVEGLSAIWFGDFVAAEEFLAQACDVAESEIFLFLCHGAICMELARQKFEAQYISRAIR
SLKKAKEISPGPLPIISLLLAQAEASLGSKAKWENNLHDEWLSWPSEMRPAELLFQMHLL
SRQLKDGSESSSIRDSDGSSLKWMLRAIHINPSCLRYWKLLQKEHVH
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atgttattgaaaaaagaagaatctgtttctgtaaagaagttggaagaagaatatatggag
tccaagtccgagtccgagtccttgccagctgacccatctctccattttaatctgggagtt
tctttatgggagaaaggtgaggaaagtcaagatatcaggggaaaagcggtggagcatttc
atgatggccgtgaagcttgaccctcagaacggggatgcattcagatatctgggtcactat
tatgcacatgattctcccatgcctcttcgggctctcaagtgctaccaaagagctgtcttt
ctcaaccctgatgattcttgtgcaggggaagcaatttgtgatatgttggacaaagaaggg
aaagagagcttggtgtttgctgtctgttgtgaagcttccgagaagtctgccagggccttt
tgggcttttcgtcaattgggttaccttcaggctcatcagaagaaatggtcagaagctgta
cataatctccagcatgccattcgtggctttcctacctgtgctgatttgtgggagacctta
ggtcttgcctaccatcgaatgggcatgttaactgctgcactcaagtcgtatggtagagcc
attgagttggaggagtccagggtttttgcatggatcgagagtggaaatatttccttgatg
cttggttcttttagaaatggagtcgagcaatttaggaatgcattaagaatatcacctcac
aacgtttctgcgcattttgggcttgcttctgcgcttcttggttttgccaaagaatgcaca
aatttaggtgcttttggatggggagctatactcttagaggaagcttctgctgtggcaact
catggtacatcattggctagcaacgtttcgtgtttatggaagctgcatggtgatatccag
cttacatatgcaagatgtttcccatggaccgaggaagggctagctgatgagactgctttc
agttcttctatcagttcctggagaagaacttgcttcctcgctgcatcacatgctagccac
ttctatcagcgtgctttgtgcttgactccctggcaagctaatatatatgctgatgttgcc
attgcgtcagatctcatttcctctttgagggtgaatcctgaagaggacctacctgtgtgg
ccgttggctgaaaagatgtgtttgggtagtatacttcttgagggccacaatgaggaattt
tggatggctctgggatgtttatcagatgatattgcattaaagcaacatgctttcatacgt
gggttgcaattggatatatctctagctgttgcatgggcatacattgggaagctttatagg
cgagaaggtgaactacagttggcccaacaagcattcgatcgcgctagaagtatagatccc
tctcttgcactgccttgggcaggcatgtcggcagatgctgagactagaaatctcaatgag
aatgaagcatatgaatgttgtttacgagctgtgcagatatttccgcttgcagaattccaa
attggtcttgcaaagcttgccttgaattctggccagttatcatcttcagaggtgtttggt
gccatcaagcaggctttgatgcgtgcccctgaataccctgaatctcacaatttgaatggc
ctagtatgtgaatcaagatctgattatgaaaatgctattacctcctacaagcttgcacgt
tgggctctaaaatcttttgcagcagaatcagcagaaccttgtctcaaagatatatccatc
aatttggctagatcactttgtatggcaggacatgcagaagacgctgttgaagagtgtgaa
tatttaagacaaaaaggacagcttagccatgaaggtctacaagtatatgctctatgttta
tggaaacttaacagatatgatacggctctgtccattgctagagaacttggttcccgcatc
ttgaccgcggagaaaaatatggccgctgcttccattagcttcatctgtagattgctgtat
tacatttcaggatcggaatcagcaatcacaagcatactgaaaatgcccaaggagtttttt
catagttcaaagattagtttcatcgtttatgctatgcacgcgttggaccaaaaagatcgg
cttgattctgttgtttctcttagtcgtgcttgtgttacgtctcatgaagagataattgca
atgcaccttctaatttctctcggtaaacttgttaagcatcaacaaaaggactgccttgcg
tttcacgagagtgtacgacacctgagaaaggctcttcacatgtatcctaacaatagtgtc
ctaagaaatcttcttggttctctcttactgtcgagcaaagaatggagagatcttggtctt
gcaaccagatgccccatcattgacttatcaaaccaacataaaaaagacgagggcatgaaa
tcagcatgtgagatcattggtgctggaacagttgcctgttttgacacaaaaaacggcaat
gagaattttgcagctttaacctgtagacaccaactgccatttcagtctggaatcataaag
ctgcagcaaaagtttttacatcaagagccgtggaactttaatgctaggtatttgcttacg
gtaaattattttatgaaggcccgtgaatcaagatttcctccacatatttgccgtgttcta
gcgaggctaacatctgttgctctgtctcatcggttgtgcttgagtaaatatatttgtctc
caatatcaatatttccagcttttactctgttctgctgagttgaatttgcaacaaggaaat
actggagaatgcgttgaacatgctagaagtgctttgggtgtttcagttgacaatagctgt
ctcttttttgcacacttactattgtgccgtgcatatgctgctgaaaatgatattgtcagc
atgagcaaagaatacagacaatgcttggaactcaaaactgattttcatattggttggatt
tgtctgaagtttatagaatctagatataagctgcaaaatgatcttggcatctcgcacttg
agctttgaggattgcttcaaagatatggagctttcatggaatatgtggatgggtatattt
aatttggtggagggtttgtctgcaatttggtttggtgattttgttgctgcagaagaattt
cttgcacaagcttgtgatgtagcagagagcgagatatttctctttctttgtcatggtgcc
atctgcatggagctcgcaagacagaagtttgaggcgcagtacatatcacgtgccataaga
agtctaaaaaaagcgaaagagatttctccgggccccttgcctatcatctcgcttttgctt
gcacaagcggaagcaagccttggttccaaagcgaaatgggaaaacaaccttcatgatgaa
tggctctcttggccttcagaaatgaggccagctgagctcttatttcaaatgcatttgctt
tccagacagctgaaagatggttccgagtcgtcatccattcgggattcagacgggagttcg
cttaaatggatgctgagagcgatccacatcaatccctcatgtttgagatattggaagctt
ttgcaaaaagaacatgtacattga
DBGET
integrated database retrieval system
