Primulina eburnea: 140827084
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Entry
140827084 CDS
T11060
Name
(RefSeq) uncharacterized protein isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
pebu Primulina eburnea
Pathway
pebu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pebu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140827084
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pebu03021
]
140827084
03041 Spliceosome [BR:
pebu03041
]
140827084
03036 Chromosome and associated proteins [BR:
pebu03036
]
140827084
Transcription machinery [BR:
pebu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
140827084
Spliceosome [BR:
pebu03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
140827084
Complex B
140827084
Complex C
U2 SnRNP specific factors
140827084
Chromosome and associated proteins [BR:
pebu03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
140827084
TFTC complex
140827084
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Motif
Other DBs
NCBI-GeneID:
140827084
NCBI-ProteinID:
XP_073045789
LinkDB
All DBs
Position
3:17095580..17105318
Genome browser
AA seq
1392 aa
AA seq
DB search
MAVSEHESSSSTSARQNTNCNSRSASNSDAGACYLAKTVLRGSVVLQAVRGHFRSPSSYD
VVFGKETSIELAIIDEDGVVQSITEQPVFGTIKDIAVLPWNERFQAQGSKLLGKDILLVI
SDSGKLSFLSFCNEMHRFFPLTHLQLSAPGNSRHEGGRMLTVDSSGCFVAASAYEDQLVI
FSLSFSSNGEIIDKKISCPPEKDGLLQTDRGSTNISGTIWSMCFISKENPQTDKEYKPVL
AILLNRRGSFYRNELLLLEWNIEEQAIHVLYKFAEAGPLAHHIVEVPHVRGYAFLFRAGD
VVLMDFRNAHNPSCVYRTSLNFTPSEEKKYEHVVRIPDIMDEEGMYSVAASALLELSDIN
KNDDPMNIDDYSSVKPGCNFVCSWSWEPGDSYNPRIIFSADSGDIYAMEVLFESDGIRVN
LSACLYKGLPSKALLWLDGGFVAAFVDMTDGMVLKFEEGLLCHRSPIQNIAPILDMAFVD
NPEEKSDQMFACSGMAPEGSLRIIRSGISVEKLLKTAPIYQGITGTWTLKMEASDPCHSF
LVLSFVEETRVLSVGISFSDVTDSVGFLPSVCTLACGLVADGVMVQIHQYGVRLCLPSGS
VHPKGVPLASPICTSWFPNNMSISLGAVGDGIIIVATSSPCFLFILGVRSSLTHHYEVYQ
MQCVKLQNEVSCFSTPQKHLEENKSLVNYGDNHHMTPLTNGNNGYMFVIGTHKPSVEVVS
FTCDKGLQIFAAGVISLTNTTGATISGCVPQDVRLVFVDRLYVLSGLRNGMLLRFEWPVT
STLSSARSPCQQSAVGSGMVNTQATLKSTSPNHKLLISMSSTSGKPKGEFPVNLQLIAVR
RIGITPVFLVSLSDSLDADVIALSDRPWLVHTARHSLSYTSISFQPSTHVTPVCSVECTR
GILFVAENSLHLVEMVPSKRLNVQKFHLGGTPRKVLYHNESRLLLVMRTDLDNDSCSSDI
CCVDPVTGCFLSSFKFDSGETGKCMNLVKVGNEHVLVVGTSLSAGPAIMPSGEAESTKGR
LVVLCLERMQYSDGGSATLCSKIGSLSQQNLSFSDGGFAAEHLSSSSLCSSLEDNSCDGI
KLKETEAWNLRLAYSTIWPGMVLAVCPYLDRYFLASAGSSFYVCSFPNDNSQRVRRLAVG
RTRFTIMTLTAHFTRIAVGDCRDGILFYLYHEDSRKLEQVYCDPVQRLVGDCMLMDVDTA
VVSDRKGSIAVMSCANHLEDDASPERNLTVSCSYYMGEISLSIRKGSFSYKLPADDPMKD
CDAASNVVNLSNNCIMASTLLGSIIIFIPLTREEYELLEEVQSRLVIHPLTAPILGNDHN
EYRSRENQGGTTKILDGDILSQFLELTSMQQEVVLALPLASPNTVMLSLRTSMPVMVNQV
VRLLERVHYALN
NT seq
4179 nt
NT seq
+upstream
nt +downstream
nt
atggcggtatcggaacatgaatcttcttcatcaacatcagcaaggcaaaacactaactgt
aactcgcgatcagcctccaacagcgacgccggggcttgttatttggcgaagacggtcctc
agaggcagcgtcgttcttcaagctgtccgcggtcacttccgctccccctcttcctacgac
gtcgtcttcggcaaggagacatcaatagagctggcgataatagatgaagacggcgttgtg
caatctatcaccgaacaacctgtgtttggtacaataaaagatattgcagtacttccttgg
aatgagagatttcaagcacagggttcaaagttactagggaaggatatattgcttgtcatt
tctgattcagggaagctgtcgtttctttccttttgcaatgaaatgcacaggtttttccca
ttgactcatttacaactttctgctcccggaaactcaagacatgaaggtggaaggatgttg
actgttgattccagtggttgctttgttgctgccagtgcgtatgaggaccagttggttatt
ttctcgctttcattttcctccaatggtgaaatcattgataagaaaatctcttgtcctccc
gaaaaagatggacttttgcaaactgatagaggttctactaatatctctggaactatatgg
agcatgtgctttatctcaaaagaaaaccctcagaccgacaaggagtacaagccagttttg
gccattcttttaaataggaggggatctttttatcggaatgaacttcttttgttggaatgg
aacatcgaggagcaagcaatccacgtgttatataagtttgctgaagctggacccttggca
catcatattgttgaagtccctcatgttcgaggatatgccttcctgtttagggctggtgat
gttgtcctgatggattttagaaacgctcataacccttcttgtgtttatagaacaagttta
aattttactccttctgaggaaaaaaaatatgaacatgttgttagaataccagatattatg
gatgaagaaggtatgtatagcgttgctgcatctgcattgttggagcttagtgacataaat
aaaaacgatgacccgatgaacattgatgattacagcagcgtgaaacctggttgcaatttt
gtctgctcgtggagctgggaacctggtgattcatataatcctaggataatttttagtgca
gattctggagatatatatgcgatggaagttctttttgagtctgatggcatcagagtaaat
ctatctgcttgtctttacaaaggtctaccatctaaggctcttttatggcttgatggtgga
tttgtggcagcttttgttgacatgactgatggaatggtattaaaatttgaagagggatta
ttgtgccacagaagtccgattcagaatattgcgccgatcttggatatggcatttgttgat
aatcctgaagagaaatctgatcaaatgtttgcctgctctgggatggcacctgaaggatct
ttgcgaatcattcgaagtggtatcagtgtggaaaaattgttaaaaactgctcctatttat
cagggtattactggtacttggacattaaaaatggaagcgtctgatccctgtcattctttt
cttgtactgtcattcgttgaagaaaccagggtgctctctgttggcattagcttttctgat
gtgactgactctgttggttttctgcccagtgtctgtacgttggcttgtggtcttgttgcg
gatggggtgatggtccagatccaccaatatggagtcagactctgtttgcctagtggatct
gtccatccaaaaggtgttcctctagcatctcctatttgcacttcatggttccccaataat
atgtccataagtcttggagctgttggagatggtataatcattgtagcaacctccagtccc
tgcttcttatttatccttggtgttagatcttcattgacacatcattacgaagtatatcag
atgcagtgtgtgaaattgcagaatgaagtgtcttgtttttccacgcctcaaaaacacctt
gaagagaataaatcattagtaaattatggagataaccaccatatgacacctcttacaaat
ggaaataatggctacatgtttgttatcggtactcataagccttcagtggaagttgtatcc
tttacatgtgacaaggggctgcaaatttttgctgcaggtgttatttcattaacaaacacc
acgggagctactattagtggttgtgttcctcaagatgtaaggcttgtctttgttgatcgt
ctgtatgttctttcgggattaaggaatggaatgcttcttaggtttgagtggcctgttact
tctacactgtcatcagctaggtctccttgtcaacagtctgctgttggttcaggtatggtg
aacactcaggccacattgaagtctacatctccaaatcataaattactaatatccatgtcc
agtacatctggaaagcctaaaggagagtttccagtgaatcttcagctgattgcggtgcgc
cgtattggtatcacacctgttttcttggtttctttgagtgattcccttgatgctgatgtg
attgctctcagtgataggccttggttagtgcataccgcaagacatagcctctcgtatacc
tccatctcctttcaaccttccactcatgtaactcctgtgtgttcagtggaatgcactaga
ggaattttatttgttgctgagaacagtcttcatctggtggaaatggtgccaagtaaaagg
ctcaatgtgcagaaatttcatcttgggggcacgcctagaaaagtgttatatcacaacgag
agcagattattacttgtcatgaggacagatttggataatgattcatgttcatctgacatc
tgttgtgtggatccagtaacgggctgcttcttgtcatctttcaaatttgattctggggag
acagggaaatgcatgaatcttgtgaaagttggaaatgagcatgtgctggtggttgggacg
agcctatctgctggtccggccataatgcctagtggtgaagctgaaagcacaaaaggtcgt
ttggtggttctttgccttgaacgtatgcagtattctgacggtggttctgcaacactatgt
tccaagattggttcattgtcccaacaaaatttatctttctccgacggtggttttgctgca
gaacatctttcaagcagtagtctctgcagcagcctggaagataatagctgtgatggaatt
aaacttaaagaaactgaagcatggaacttgcgattagcttattcaaccatttggccaggg
atggtccttgctgtgtgcccttaccttgatcggtatttcttggcttctgctggtagttct
ttttatgtttgcagttttccaaacgataactctcagagggtcaggagattggctgttgga
agaacgcgttttacaatcatgactttaactgcacattttaccagaattgctgttggggat
tgtcgtgatggtattcttttctatttgtaccatgaggattccagaaaactggagcaagta
tactgtgatcctgtccaacggctagttggggactgcatgcttatggatgtagatactgct
gttgtttcagatcgtaagggaagtattgctgtcatgtcatgcgcaaatcatttagaagat
gatgcaagtccagagcggaacttgacagttagttgttcttactatatgggggagatttcc
ttgagtataaggaagggatcattttcatacaaactcccagcagatgacccaatgaaggac
tgtgatgctgctagtaatgttgttaacctgtcaaataattgtatcatggcatcgactctg
ttgggcagcataataatcttcattcccttgacaagggaggaatatgagttgctggaagaa
gttcaatctaggctggtgattcacccgcttactgctcctattttaggaaacgaccacaat
gagtatcgaagccgtgaaaatcagggtgggacaactaagatcctagatggtgacattctg
agtcagttcctggagctaacaagcatgcaacaagaagttgtgctggcattgccgcttgcc
tcaccaaatactgtaatgttaagtttgagaacatccatgccagttatggtcaatcaggtt
gtcagattgcttgaacgagtacattatgccttgaactaa
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