Primulina eburnea: 140830046
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Entry
140830046 CDS
T11060
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like isoform X1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
pebu Primulina eburnea
Pathway
pebu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pebu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140830046
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pebu03041
]
140830046
Enzymes [BR:
pebu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
140830046
Spliceosome [BR:
pebu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
140830046
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_22
AAA_19
PWI
nSTAND3
AAA_30
T2SSE
SRP54
PhoH
Flavi_DEAD
ABC_tran
AAA_16
Motif
Other DBs
NCBI-GeneID:
140830046
NCBI-ProteinID:
XP_073049429
LinkDB
All DBs
Position
1:complement(43827001..43860400)
Genome browser
AA seq
1043 aa
AA seq
DB search
MDDLRTWVSDKLISLLGYSQPTVVQYVITLSKKASSPSEIVNQLADLGLSCSSEISLFAK
EIFARVERKTSGPNLYQQREVQAAMLARKQKTYKLLEADDEEEDMVPVASLPKKEDTRRK
KFRKRSELHDDTDDEVVRKGIQDRKAQKRTSHDEDDDSESEEQRLRDQREREELEQHIKE
RDAAGTRKLTDQKLTKKGEEEAIRRSKALEDDGIGTLRKVSRQEYLKKREQKKLEELRDD
IEDEQYLFEGVKLTEAEKRELRYKKEIYELVKNRTEESDDTNEYQIPDAYDMEGGVNQEK
RFAVAMQRYRDPTAEEKMNPFAEQEAWEEHQIGKATLKFGSKNRKEKHEDFDFVFEDQIE
FIQAAVMDGVNVEQDSIELVEASAAKSAFEKLQNDRKTLPIYPYREELLQAIRDHQVLVI
VGETGSGKTTQIPQYLHETGYSERGKIGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSI
RFEDCTSEKTIVKYMTDGMLLREFLGEPDLESYSVVMVDEAHERTLSTDILFGLVKDIAR
FRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRFPVEIHYTKAPEADYLDAAVVTALQ
IHVTQPPGDGDILVFLTGQEEIEMAEEILKHRTRGLGTKIAELIICPIYANLPTELQAKI
FEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFCKMKSYNPRTGMESLLVTPISKASA
NQRAGRSGRTGPGKCFRLYTAYNYYNDLDDNTIPEIQRTNLANVVLSLKSLGINDLLNFD
FMDPPPSEALLKALELLYALSAVNKHGELTKAGRRMAEFPLDPMQSKMIVASDKYQCSDE
IISIAAMLSIGNSIFYRPKDKQVHADNARLNFHMGNVGDHIALLKVYSSWKETNYSTQWC
YENYIQVRSMKRARDIRDQLEGLLERVEIELTPNPNDLDSIKKAITSGFFPHSARLQKNG
SYRTVKHPQTVQIHPSSGLAQVQPRWVIYHELVLTTKEYMRQVTELKPEWLVEIAPHYYQ
LKDVEDVGSKKMPRGEGLASTNG
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atggatgatttgaggacatgggtgtccgacaaattgatttctcttttggggtattcgcag
cccactgttgttcagtatgtgataacactgtctaagaaagcttcatcgccctccgagata
gtaaatcaactggcagatttgggattgtcatgctcttcagagatatccttgtttgctaaa
gaaattttcgctagagttgagcgtaagacttcaggaccaaatctatatcaacaaagagaa
gtgcaggctgcaatgcttgcacggaaacaaaagacctataaactgttggaggctgatgat
gaggaggaggatatggtccctgtggcttcccttcccaaaaaagaggatacaagaagaaaa
aagttcagaaaaaggagtgagcttcacgacgatacagatgatgaggttgtcagaaaaggg
atccaagatagaaaagcacaaaaacgaacttcccatgatgaagatgatgattctgagtca
gaagaacaaagactgcgcgatcaaagggaaagggaggagctggagcagcatatcaaggaa
cgcgacgcagcagggactaggaagttgactgatcaaaagcttacgaagaaaggggaagaa
gaggcaattcggagatctaaggcattggaggatgatggcattgggacattgaggaaagtg
tccagacaagagtatttgaaaaaacgagagcaaaagaaattagaggaactcagagatgat
attgaggacgaacaatatttatttgagggagtcaagctgactgaggccgaaaaacgtgag
ctaaggtataagaaagagatatacgagcttgttaaaaatcggacagaagaatctgatgac
acgaatgagtatcaaatccctgatgcatatgacatggaaggtggtgtaaatcaagagaag
aggtttgctgtggccatgcagcgatatagggatcctactgcggaggagaagatgaacccc
tttgctgagcaagaagcgtgggaggagcatcagattgggaaagcaactcttaaatttgga
tctaagaataggaaggaaaagcacgaggattttgattttgtgtttgaagaccaaatagag
ttcatacaagcagcagttatggatggtgtgaatgttgagcaagactccattgagttggtc
gaagcatctgctgccaaatctgcttttgaaaaacttcagaatgacagaaaaactctgcca
atttatccctatagggaagagttgctccaggctattcgtgatcaccaggttcttgtcatt
gttggagaaactggttcaggaaagactacgcagatacctcaatacctacacgagacagga
tatagcgagcgtggaaaaataggatgtacccagccacgccgtgtcgcggcaatgagtgtt
gctgctcgtgtttctcaagaaatgggagtaaaacttgggcatgaggttggttattctatt
cgttttgaagattgtacttctgaaaagacaattgttaaatacatgacggatggaatgcta
ttacgtgaatttcttggagagcctgaccttgaaagttacagtgtggtgatggtagatgaa
gcccatgaaagaacactttcgacggacatcctttttggcttagttaaggacattgctcgg
tttcgccctgacctcaaattgctcatttcaagcgccactcttgatgctgaaaagttcagt
gattattttgactctgcgccaatttttaagatacctggaagaagatttcctgttgaaata
cactatactaaggcacctgaagctgattacttggatgctgcagtagtcactgctcttcaa
attcatgtgacacaaccaccaggagatggtgatatactagttttccttactgggcaggag
gagattgaaatggccgaagagattcttaagcataggactagaggattgggaacaaaaata
gcggagctcatcatatgcccaatttacgcaaacttgccaacagagctacaagctaagata
tttgaacccactcctgaaggggcacgaaaagttgtcctagccacgaacatagctgaaaca
tcattgacgatagatgggatcaagtatgtaattgatccgggattttgtaagatgaagtcg
tataacccccggactggaatggaatcactcctggtcactcctatatcaaaagcatcagct
aatcagcgagcaggtcgatcaggaaggacaggcccaggaaaatgctttcgattgtatacc
gcttataattattataacgatttggacgataataccatccccgaaatacaaaggaccaac
ttagccaacgtggtccttagtctaaagagccttggcatcaatgatctgctgaattttgac
ttcatggatcctcctccatctgaagccttattgaaggcgttggagttgctttatgcttta
agtgcagttaacaagcatggcgagttgacaaaagcgggtagaaggatggccgagttcccc
ctagatcctatgcagtcaaagatgattgttgcttccgataaataccagtgttctgatgaa
atcatctctattgctgctatgctatcaattggaaattctatcttttatcgtcccaaggat
aagcaagttcatgcagacaatgctcgcttgaattttcatatgggaaatgtcggagatcat
atagccttgctcaaggtgtatagttcgtggaaggaaaccaattattcaactcaatggtgc
tatgaaaattatattcaagtcaggagcatgaagagagctagagatatacgggatcaactg
gagggtctgcttgaaagggttgagattgagttgaccccaaatcccaatgatttagattct
ataaagaaagccataacttccggattcttcccccactcagcgaggctacagaagaatgga
tcctatagaactgtgaaacatccgcagactgttcaaattcaccctagctcaggtttagct
caggtgcaaccaagatgggtcatctaccatgaactagttttgacaacaaaggagtatatg
cgacaggtgactgaactaaaaccagagtggctcgttgaaatagctcctcattattatcag
ttgaaggatgttgaagatgtgggatcaaagaaaatgcctcgtggtgagggcctagcatcg
acaaatggttga
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integrated database retrieval system
