Primulina eburnea: 140832321
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Entry
140832321 CDS
T11060
Name
(RefSeq) LOW QUALITY PROTEIN: probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
pebu Primulina eburnea
Pathway
pebu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pebu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140832321
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pebu03041
]
140832321
Enzymes [BR:
pebu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
140832321
Spliceosome [BR:
pebu03041
]
Complex C
Other components
Step II factors
140832321
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
AAA_30
nSTAND3
Sigma54_activ_2
ABC_tran
Cas3-like_C_2
AAA_16
nSTAND_NTPase5
TsaE
PhoH
UvrD-helicase
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
140832321
NCBI-ProteinID:
XP_073052370
LinkDB
All DBs
Position
5:complement(3078810..3083754)
Genome browser
AA seq
1186 aa
AA seq
DB search
MGAERKDDGLKKLEYLSLVSKVCSELETHLGFGDKVLAEFITEMGRNCETEDEFDGKLKE
NGAEMPDYFVKTLLTIIHAILPPNPRSKSEKGSKEGDKSAFSALKIKDGKERVKELEKEI
EEETRGRRRKEEDEEDNKHMERDRDKRERRRDRDRDRDRXQDRDRDRDSDRGRDRDGYHD
DRGRGRYRDKVGDGDRDWSRSETNRRDEYSEDRERERKESREERRSGELELYKVYKGRVS
RVMDTGCFVQLEGFRGKEGLVHVSQMATRRIANAKDVVKRDQEVYVKVISVSGNKLSLSM
RDVDQNSGKDLLPLKRSEEEDVSRINPSSLNDGGGMRGRIGLSGIKITEEEVVVQSRRPL
KRMSSPEMWEAKQLIASGVMGVKEYPMFDEETDGLLYQEEGAEEELEIELNEDEPVFLQG
QSRYSIDMSPVKIFKNPEGSLSRAAALQSALIKERREVREQQQRTMLDSIPKDLNRPWED
PMPETGERHLAQELRGVGLSAYDMPEWKKDAYGKALTFGQRSKLSLQEQRQSLPIYKLKN
ELVQAVHDNQVLVVIGETGSGKTTQITQYLAEAGYTTKGKIGCTQPRRVAAMSVAKRVAE
EFGCRLGEEVGYAIRFEDCTGPETVIKYMTDGMLLREILIDEDLSQYSVVMLDEAHERTI
HTDVLFGLLKQLLKRRTDLRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQP
ESDYLDASLITVLQIHLTEPEGDVLLFLTGQEEIDYACQCLYERMKGLGKNVPELIILPV
YSALPSEMQSRIFEPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLD
SLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAFHNEMAPTSIPEIQRINLGMTTLTM
KAMGINDLLSFDFMDPPSPQALISAMEQLYTLGALDEEGLLTKLGRKMAEFPLEPPLSKT
LLASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAW
KAKNFSGPWCFENFVQSRSLRRAQDVRKQLLSIMDKYKLDVVTAGKNFTKIRKAIAAGFF
FHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKW
LVELAPRFFKVSDPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atgggagcggaaaggaaagacgatggattgaagaaattggagtatttatcactggtttca
aaagtgtgtagcgagttagaaacgcatttagggtttggggataaggtgttggccgagttc
atcacggagatgggccggaactgcgagacagaggatgaatttgatgggaaactgaaagag
aatggcgcggaaatgcctgattactttgtgaagacactgcttactatcattcacgcaatt
ttaccgccgaatccaaggtcgaaatcagagaaaggatctaaggagggagataaatctgca
ttctcggctttgaaaattaaggatggtaaggagagagtgaaagaattggagaaagagata
gaagaagagaccagagggcggaggagaaaggaagaagatgaggaggataataagcacatg
gagagggatagagacaaaagagagaggcggagggacagggatagggacagggacaggnna
caggacagagacagagacagagatagtgataggggcagggatagagatggctaccatgat
gacagaggtaggggaagatatagggacaaggttggggatggggacagggactggagtaga
agtgaaacgaataggagggatgagtacagtgaagatagagaaagggagaggaaggaatcg
agggaggagaggaggagcggagagctggagttatacaaagtttataaggggagggtgtca
agggtgatggatactggctgttttgtccagctcgagggatttaggggaaaagagggtctg
gtacatgtttcccagatggcaaccaggaggattgctaatgctaaggatgtcgtgaagcgg
gatcaggaggtatatgtcaaagttatatctgttagtgggaataagttgagtttgtcaatg
agggatgtggatcagaatagcggaaaggatttgcttcccttgaaaaggagtgaggaggag
gatgtttcgagaataaatccttcaagtttaaatgatggtggaggtatgaggggtaggatt
ggtctctcagggatcaaaattactgaggaggaggtggttgtgcagtcgcgaaggccactc
aaaaggatgagttcaccagaaatgtgggaggctaagcaacttatagcctcaggtgttatg
ggtgtaaaggagtatccgatgttcgatgaagagactgatggtttgctttatcaggaggaa
ggtgcggaagaggaacttgagattgaattgaatgaagatgagcctgtctttttgcagggt
cagagtcgatactctattgacatgtctcctgtgaagatattcaagaaccctgaggggtct
ttaagtcgtgcagcagctcttcagtctgctcttataaaagagaggagagaagtccgagaa
cagcagcaaagaacaatgttggattccattccaaaggatctgaataggccatgggaagac
ccgatgcctgaaacaggggagaggcatcttgcgcaggaacttaggggcgttggattgtct
gcatatgatatgccagagtggaagaaggatgcgtacggtaaagctctcacttttgggcaa
agatctaagctttcccttcaggaacagaggcaaagtttacccatctacaagttgaagaat
gaacttgttcaggctgtacatgataatcaggttttagttgttataggtgagacaggatcg
ggaaagacaacacagataacacagtatctagccgaggcgggatatactaccaagggaaaa
ataggttgtacccagcctcgtagagtggctgcaatgtctgtagccaagagagttgctgag
gagtttggttgtcgtttaggggaagaagttggatatgcaattcgatttgaagattgcaca
ggtccagagactgtaatcaagtatatgactgatggcatgcttctgagggagattctgatt
gatgaagatttatctcaatactcggtagtcatgcttgatgaagctcatgagaggacgatt
cacacagatgtcctttttggattattaaagcaacttctgaaacggagaactgaccttcgt
ttgattgtcacatctgcaactttggatgctgagaaattttcgggatatttcttcaattgt
aatattttcacaattcctggaagaactttccccgtggaaatattatacaccaaacaacca
gaaagtgactacctagatgcttctttgattactgtcttacagattcatttgactgaacct
gaaggcgatgtacttctgtttttgactggccaagaagagattgattatgcatgtcagtgc
ctatatgagaggatgaagggtttaggaaaaaatgtccctgagctgatcattttaccggta
tacagtgccctacccagtgaaatgcagtccaggatatttgaacctgctcctccaggaaag
agaaaggttgttgttgccaccaatatagccgaagcatctttgactattgatggtatattt
tatgttattgatccgggctttgcaaagcagaatgtgtacaatcctaaacaggggcttgat
tcactggtgataactccaatatcacaagcatctgcaaagcaaagagcaggaagggcagga
cgaacgggaccgggtaagtgctatcgtctctacacagagagtgcgttccacaacgagatg
gctcccacgtcaattccagagatccagaggatcaatctagggatgactactcttacaatg
aaagctatgggtattaacgatctgctatccttcgactttatggaccccccttcacctcag
gccctcatttctgccatggaacagctgtatactttgggggctcttgacgaagaggggctg
cttacaaagttgggaaggaaaatggccgagtttcctttggaaccccctctttccaaaacg
cttcttgccagtgttgatcttggttgtagtgatgagattttgacaatcattgcaatgatt
cagactgggaacatcttctaccgacctagagaaaaacaggctcaagcagaccagaaaagg
gcgaagtttttccagcctgaaggagaccatctgacattactcgcagtctatgaagcctgg
aaagcaaagaatttttctggtccgtggtgctttgagaattttgttcagtctcgatcattg
aggagagcacaggatgtgagaaaacagcttctatccatcatggataagtacaaattggat
gttgttactgctggaaagaatttcacaaagatccggaaggccatagctgcgggtttcttt
ttccatgctgctcggaaagacccacaagaagggtacaggacgctagttgagaatcaacca
gtttacattcatcctagcagtgctcttttccaaagacagcctgactgggttatctaccat
gagctggtgatgactacgaaagagtatatgcgtgaagttactgtcatagatccgaagtgg
cttgttgaacttgcaccaagatttttcaaggtgtcagatcctacaaaaatgagcaaacgt
aaaagacaagagcggattgaacccctctacgacagataccatgaacctaattcttggcga
ttaagcaaaaggcgtgcttaa
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integrated database retrieval system
