Primulina eburnea: 140834505
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Entry
140834505 CDS
T11060
Name
(RefSeq) LOW QUALITY PROTEIN: replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
pebu Primulina eburnea
Pathway
pebu03030
DNA replication
pebu03420
Nucleotide excision repair
pebu03430
Mismatch repair
pebu03440
Homologous recombination
pebu03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pebu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
140834505
03420 Nucleotide excision repair
140834505
03430 Mismatch repair
140834505
03440 Homologous recombination
140834505
03460 Fanconi anemia pathway
140834505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pebu03000
]
140834505
03032 DNA replication proteins [BR:
pebu03032
]
140834505
03400 DNA repair and recombination proteins [BR:
pebu03400
]
140834505
Transcription factors [BR:
pebu03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
140834505
DNA replication proteins [BR:
pebu03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
140834505
DNA repair and recombination proteins [BR:
pebu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
140834505
MMR (mismatch excision repair)
140834505
DSBR (double strand breaks repair)
HR (homologous recombination)
140834505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
zf-CCHC
zf-CCHC_3
DUF223
CDC24_OB3
zf-CCHC_2
Motif
Other DBs
NCBI-GeneID:
140834505
NCBI-ProteinID:
XP_073055530
LinkDB
All DBs
Position
6:33677342..33681331
Genome browser
AA seq
859 aa
AA seq
DB search
MPPINLTEGAIALLSSGEAQGTDVKPVLQVADIRLVNTQNQNNNNERYRILLSDGEFTQQ
GMLATQRNELVRSEMLQKGSIVQLTQFVCNLIQNRMIIIIIDLDVILQKCDPIGEPKQYP
NKTDGNAPSIARPTAQVQPTNQPVTGSGPQFYASGPAPLPNVGSGIHAPPVMEGRNAGSH
SYNSPISNLDSSRYGSTNAPPQYAKSESGSGFXRAPNNFVRPPQSHHNQPPPMFPNRGPV
AKNEAPPRVIPIAALNPYQGRWTIKARVTSKGELKHYSNPRGDGKVFAFDLLDSDGGEIR
VTCFNAVADQFYNQIEHGRVYMISKGSLKPAQKTFNHLRNDHEIYLESTSIVQPCFEDDK
TIPQQQFHFRPICDIEGLDNNSVVDVIAVVSSINPSTSIMRKNGQETQKRTLQLKDMSGR
SVELTLWGNFCNAEGKTLQNMCDSGVFPVLAVKSGRVNDFNGKSLGTISTSQLFIEPDFL
EAHKLRTWFDNDGKNTTALSISRETNFVRTDTRKTVSQIKDEKLGTSEKPDWIAVSATLT
FIKVDNFCYTACPIMIGDRQCNKKVTNNGDGKWRCDRCDQFVDECDYRYILQMQIQDHTG
LTWVTAFQETGEEILGISAKDLYYLKYEEQDDDRFSELIRNVLFTKFIFKLKVKEETFSD
EQRVKSTVVKADKVNFQTETKYLLDLIAKFKEEDSGSLPLKSEKPIAVSGLNHGGFGSGS
RESTASAMNYSGSNINVARNTPGQMGMYVNQYSGSQLPPTSSAGMHMSCNSCGASGHSSA
NCPSVMGGPGQQSYGGGFDNKVTPRPSSGGASSECFKCHQLGHWAKDCPNSNNVPPAYGS
SNATPGRYGTASKQYVGGF
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atgccgccgattaatttgacggagggcgcgattgcgctgctctcgagcggcgaagcgcag
gggacggacgtaaaacccgtgcttcaagtcgctgacatacgtttggtgaacacacagaac
cagaacaataacaatgaacggtatcggatcctgttgtcggacggggagttcactcagcaa
ggcatgctcgcgactcagcgaaacgaattggtgcggtctgaaatgctgcagaaaggttcc
attgtgcagctgacgcagttcgtttgtaatcttattcagaatcgcatgattataatcatt
attgatctggacgtgatactacaaaaatgtgaccctattggtgaaccaaagcaatatcct
aacaagaccgacggaaatgccccttcaattgctagaccgacagcacaggttcagccaaca
aatcagccagttactggaagtggtccacaattttatgcttctggtccagctccactgcca
aatgtgggcagcggaattcatgctcctcctgtgatggaaggtcgaaatgcaggctcgcac
tcttataattctcccatcagcaatctagactctagcagatatggttcaacgaatgcacct
ccacagtatgcgaaatcagaatctggttctggatttnctcgggctcctaacaattttgtc
aggccgcctcagtcacatcataatcaaccgcctccaatgttccccaacagggggcctgta
gctaaaaatgaagctcctccaagagttattcctatcgctgcactgaatccttatcaagga
agatggacgattaaggcaagagtgacgtccaaaggggaactcaagcactacagcaatcct
cgaggtgatggtaaagtatttgcatttgatcttcttgattctgatggaggagaaataaga
gtaacatgcttcaatgctgtggcagatcagttttacaatcaaattgagcatggtagagtt
tatatgatttctaaaggttcgctaaagcctgctcagaaaacttttaatcaccttcgtaat
gatcatgagatttatctggagagtacttcaattgtgcaaccctgctttgaggatgataaa
accatccctcagcagcaatttcattttcgccccatatgtgacattgaaggcctagacaac
aacagtgtagtagatgtgattgctgttgtttcttctatcaatccatccacctcaataatg
aggaaaaatggtcaagaaactcagaaaagaactctccaactcaaagacatgtcaggcaga
agtgttgaattaactttgtggggaaacttttgcaatgcagaaggtaaaacacttcagaac
atgtgcgattctggagtgtttcctgttttggcagtgaaatctggtagagtgaatgatttt
aatggaaaatctttgggaaccatttccactagccagctgtttatagagccagattttctt
gaagctcacaaactcagaacatggtttgacaatgatggaaaaaataccactgctttatct
atatcaagggaaacaaattttgtccggactgatacacggaaaactgtgtctcagattaaa
gacgaaaaattaggaacttccgagaagcctgattggattgctgtctctgccaccctcacg
ttcataaaagtggacaacttctgctatactgcatgccccatcatgatcggggatcgtcag
tgcaacaaaaaggttacaaataacggggatgggaaatggagatgtgacagatgtgatcag
tttgttgatgaatgcgattatagatatattctccagatgcaaatccaggatcacactggg
ttaacatgggtgactgcgtttcaggaaacaggagaggagatattgggaatatcagcaaaa
gacctgtactatttgaaatacgaagaacaagatgatgatagattttctgaactaatacgg
aatgttctgtttaccaaattcatattcaaattaaaagtcaaggaagagacttttagtgac
gaacagcgtgtcaagtcaacagtcgtaaaagcagataaggtgaatttccaaaccgagacc
aaatatcttctggacttgattgcgaagttcaaagaagaggactcgggttctttacctctt
aaaagtgagaaacccattgcagtatccggactgaatcacggtggatttggaagtggaagc
agagaatcaacagcatctgctatgaactacagtggaagtaacatcaacgtggccagaaac
acacctggtcagatgggcatgtacgttaatcagtatagtggttcacaacttccccctact
agctctgctggtatgcatatgagttgtaatagctgtggtgctagcggtcatagctctgca
aattgtcctagtgttatgggtggtccagggcaacagtcttatggaggtggttttgacaat
aaggtgaccccaaggccgagttctgggggtgcatccagtgaatgcttcaaatgccatcaa
ttgggacactgggctaaggattgtcccaattcgaacaatgttcctccagcttatgggagc
agtaacgcaactccaggtagatatggcacagcatcgaagcaatatgttggcgggttttga
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