KEGG   Primulina eburnea: 140834708
Entry
140834708         CDS       T11060                                 
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
pebu  Primulina eburnea
Pathway
pebu03013  Nucleocytoplasmic transport
pebu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pebu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    140834708
  09122 Translation
   03013 Nucleocytoplasmic transport
    140834708
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pebu03019]
    140834708
   03041 Spliceosome [BR:pebu03041]
    140834708
Messenger RNA biogenesis [BR:pebu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     140834708
Spliceosome [BR:pebu03041]
 Complex C
  Other components
   EJC/TREX
    140834708
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    140834708
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40_CDC20-Fz WD40_Prp19 WD40 Beta-prop_WDR3_1st WD40_WDHD1_1st Beta-prop_EML_2 ANAPC4_WD40 EIF3I Beta-prop_CAF1B_HIR1 WDR55 WD40_Gbeta Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_2nd Beta-prop_WDR19_1st Beta-prop_NOL10_N Beta-prop_RIG_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_Aladin Beta-prop_TEP1_C Beta-prop_Vps41 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd DSE1_N NBCH_WD40 Beta-prop_EML eIF2A Beta-prop_EIPR1 Beta-prop_WDR35_TULP_N Beta-prop_WDR75_1st Beta-prop_HPS5 Beta-prop_IFT140_1st Beta-prop_DCAF12 WD40_RFWD3 WD40_MABP1-WDR62_1st Beta-prop_IFT122_2nd Tricorn_2nd Beta-prop_NUP159_NUP214 TRM82_WD Beta-prop_IFT80_2nd PAC11 DUF7099 Beta-prop_WDR41 WD_LRWD1 Beta-prop_Nup120_160
Other DBs
NCBI-GeneID: 140834708
NCBI-ProteinID: XP_073055882
LinkDB
Position
6:complement(35323574..35327882)
AA seq 313 aa
MEESLPFKNLHSREYQGHKKKVHSVAWNCTGTKLASGSVDQTARIWHIEPHGHSKAKDSE
LKGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSAKCSQQVELSGENINITYKPDGT
HIAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNMTGEIFFLTTGNGTVEILAYPSL
KAVDTLMAHTAGCYCIAIDPLGRYFAVGSADSLVSLWDIKEMLCIHTFTKLEWPVRTLSF
NHTGEFIASASEDLFIDISNVETGRSIYQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQA
DEGVFRIFGFENA
NT seq 942 nt   +upstreamnt  +downstreamnt
atggaggaatcactgcccttcaaaaacctccacagtagggagtaccaaggccacaagaag
aaggtgcattcggtggcgtggaattgcacgggcacgaaactagcttcaggctctgttgat
cagactgctcgaatatggcacattgaaccccacggtcatagcaaggctaaagatagcgag
ctaaaaggccatgcagatagtgtcgatcagttatgctgggatccaaaacatgctgatttg
attgcaactgcatcaggcgataagacagttcgcttgtgggatgctcgtagtgcaaaatgc
tcacagcaggtagagctaagcggggagaacataaatattacctataagcctgatggcact
catatagcagtcggtaacagggatgatgaattaacaattttggatgttcgcaaattcaag
ccaatacataaacgcaagttcaattatgaggtgaatgagattgcatggaacatgacagga
gagatattctttttaactacagggaatggtactgtagaaatacttgcatatccatccctc
aaggcagttgacacacttatggctcatactgctggttgctattgtattgcgattgaccca
ctgggaagatattttgctgttggaagtgctgactcattggtcagtctttgggatattaaa
gaaatgctctgtatccacacattcactaaacttgaatggcctgtccggacattgagtttc
aaccacactggagaatttattgcttctgccagtgaggacttgtttatcgatatttccaat
gttgaaactggaagatccatctaccagattccatgccgggctgccatgaacagtgtggaa
tggaatcctaagtacaacttacttgcatatgctggagatgacaaaaacaagtatcaggct
gacgaaggcgttttccggatatttggctttgagaatgcatag

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