Primulina eburnea: 140836502
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Entry
140836502 CDS
T11060
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pebu Primulina eburnea
Pathway
pebu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pebu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140836502
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pebu03019
]
140836502
03012 Translation factors [BR:
pebu03012
]
140836502
Enzymes [BR:
pebu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
140836502
Messenger RNA biogenesis [BR:
pebu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
140836502
Translation factors [BR:
pebu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
140836502
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
OB_NTP_bind
R3H
HA2_C
HA2_N
AAA_22
ATPase
Ank_2
Ank_5
nSTAND3
AAA_19
AAA_7
Rad17
ABC_tran
AAA_25
Ank_3
AAA_23
SRP54
Motif
Other DBs
NCBI-GeneID:
140836502
NCBI-ProteinID:
XP_073058160
LinkDB
All DBs
Position
7:complement(2083059..2091538)
Genome browser
AA seq
1238 aa
AA seq
DB search
MYKISQHNQSRSRLQWEEEARNKGLSESERMATSSSAGGIGKKRQKKARNPQEVKNVAES
TRIQIAQILENFRTSNDDVYTFQENLTNHGRASVHMLCRKMGMSSKSSGRGEQRRVSVYK
TKKGLDPVKGKENVVSFRFSKDTKDVLQDFFSRYPPDAAEVADNKHVESSGTSDRVRGKR
DDIFAKSQMTNSEIANKLETIASRIEKDPNLRQIAGKRSKLPIAPFKDVITRTVESHQVV
LICGETGCGKTTQVPQFLLDHAWSKGETCKIVCTQPRRISATSVAERIASERGENVGNSV
GYKIRLESKGGRHSSLVFCTNGVLLRVLIGQGIGRTNKKDSKKMANGISDITHIIVDEIH
ERDRFSDFMLAIIRDMLHSYPRLRLVLMSATIDAERFSKYFGGCPIVQVPGFTYPVKAFY
LEDVLSIVQSTGNNDVACLTNVEDTESSILTEEYKIALDEAIDLALSSDEFDPLLEFISS
EGDPKVFNYQHSKTGETPLMVFAQKGRVADICMLLSFGVDCHLRSKFDKTALDFAEQDNH
REAAEIIKKHMEKPLSYSDKDKILLEKYMANVDPELIDFVLIEKLLRRICDDSKDGAILI
FLPGWDDINRIRERLLASHFFKDSSKFVIISLHSLVPAVEQKKVFRRPAPGCRKIVLSTN
IAETSVTIEDVVYVIDSGRMKEKSYDPYNNVSTLHSSWISKASAKQREGRAGRCQPGICY
HLYSKLRASSLPDFQVPEIKRMPIEELCLQVKLVDPSCKIEDFLQKTLDSPVYETIHNAI
TVLQDIGALTPDEKLTDLGEKLGSLPVHPLTSKMLFVAILLNCLDPALTLACASDYRDPF
ILPILPDERKRAAAAKLELASFYGGHGDQLAIIAAFECWKMACENGDEARFCSRYFISPS
TMKMISGMRKQLEAELVQSGFILEDASRCSLNARDPGIIHAIVVAGLYPLVGRLLAPTKS
CKRAIVETAGGNKVRLHPHSTNFKLSMRKCTPQPLIIFDEITRGDGGLHIRNCTVVGPLP
LLLLAKEIVVAPSNENDDEDDESDYEDVDAESDEDKTGSYDLPNFQRSEKFMSSPDNSVK
VVIDSWLPFESTAIDVAQIYCLRERLSSAILFKVRHPRKLLPEHLGASLYAIACSLSYDG
MSGITLPLEPVDSLASMISATDISNPNHGKKTGMNQLPKHYPTYHGRHQNFASHQGGGMN
RSQKLAPQSSSAVAHESVIYGTRSKGNCSKRQRDNGLK
NT seq
3717 nt
NT seq
+upstream
nt +downstream
nt
atgtataaaatctctcaacacaatcagagccgaagcagactgcagtgggaagaagaagca
agaaacaaaggtctgtcagaatctgaaagaatggctactagttcatccgccgggggaata
ggtaagaagaggcagaagaaagctagaaacccccaagaggtcaaaaacgtggccgaatca
acacgcattcaaatcgcccagattcttgagaattttagaacttccaacgatgacgtgtac
acgtttcaagaaaacctgacaaatcatgggcgagcttcagtgcatatgttatgcaggaaa
atgggtatgagttccaaaagttctgggcggggggagcagcgacgtgtgtctgtttataag
accaaaaagggattggaccccgttaaagggaaagaaaatgttgtttcttttagattttca
aaagatacaaaagatgttttgcaggattttttctctcgctatccccctgatgctgcggag
gtggctgataataaacatgtagaaagcagtggaacaagcgatagagtgagaggaaagaga
gacgatatctttgctaaatctcagatgaccaattctgaaattgcaaataagttggaaaca
attgcttccagaatagagaaggacccaaacttgagacagattgcaggaaagaggtccaag
cttccaattgcacctttcaaggatgttattacgcgcacagtggagtctcatcaggttgtg
ctgatttgtggcgaaactggatgtgggaaaacaacacaggttccgcagtttcttctggat
catgcatggagtaaaggagagacatgtaaaatagtttgtacgcagccaaggcgaatatct
gccacatcagtggctgaaagaattgcttcagaaagaggtgaaaatgttggaaattccgtg
gggtacaagatacggctggagagcaaaggtgggaggcattcatctcttgtattctgcacc
aatggggtgctgttgagggttttaattggtcaaggaattggcagaacaaacaaaaaagat
tccaaaaaaatggcaaatgggatctctgacataacccacattattgtggatgaaattcat
gaaagagaccgtttctctgattttatgctagcaataatcagagacatgctacattcatat
cctcgtctgcgtctggtattaatgagtgccacaattgatgcagagagattctcaaagtac
tttggtggctgcccaattgttcaagtccccgggtttacttatcctgtaaaagctttttac
cttgaggatgtactatcgattgtgcaatcaactgggaataatgatgttgcgtgcttgaca
aatgtcgaagacacggagagctcaatactaaccgaggaatacaaaattgctcttgatgag
gctattgacttggctttgtcaagtgatgagtttgatcccctccttgagtttatatcatca
gaaggagatcccaaagtctttaattaccagcactccaaaactggagaaacacctctaatg
gtatttgcgcagaaaggaagagtggcagatatttgcatgcttctctcttttggtgtggat
tgtcatttacgatccaagtttgataagactgctctagattttgctgaacaagataatcat
agggaggctgccgaaattattaaaaaacatatggagaaacccttgtcctattcagacaag
gataaaatattgcttgagaagtacatggccaatgttgaccctgagctaattgattttgtg
ctcattgaaaaattactgaggagaatatgtgatgactcgaaggacggagctattctaatt
tttcttcctggttgggacgacataaatagaataagagagaggttactagctagtcatttt
ttcaaagattcgtccaagtttgtaattatatctcttcattctttggtgccagcagtggag
caaaagaaagtcttcagaaggcctgctccaggatgccgcaaaatagttctgtcaaccaat
atagctgagacatctgtcaccattgaggatgttgtttatgttatagacagtggacgaatg
aaagaaaaaagttatgacccttataataatgtatccactcttcattcttcttggatttcg
aaagcaagtgcaaaacaaagagagggacgcgcaggaaggtgccaaccaggaatttgttat
catctttattcaaaactccgtgcatcttcactgcctgattttcaggttcccgagattaag
agaatgccaatagaagagctatgtttacaggtgaagctggttgatccatcttgcaaaata
gaagattttttgcagaagacattagattctccagtttatgaaacaatacataatgcaatc
actgttcttcaagatattggagcacttacgcctgatgaaaaactcacagatcttggggag
aagcttggatctctgccagttcatccattaacaagcaagatgctatttgtcgctatattg
ttgaactgccttgacccggctctgacattggcttgtgcttctgattatagagatccattc
attttacccatattacctgatgaaaggaagagagctgcagctgctaaattggagctggct
tcattttatggtgggcatggtgaccagctagctattattgcagcatttgagtgctggaaa
atggcctgtgaaaacggcgatgaagctagattttgctctcgatacttcatatctccaagc
actatgaaaatgatatcaggaatgcgcaagcaactggaggctgaactagtccaatctggt
tttatacttgaagatgcgtctcgttgtagcttaaatgcacgggaccctggaattattcac
gctatcgttgttgctggtttatatccattggtcggaagactgcttgctcctaccaaaagt
tgtaagagagctatcgtggagactgcaggtggcaataaggttaggttgcacccccattca
accaatttcaagctatcaatgagaaaatgtactcctcaacctctgatcatatttgatgag
attacccgtggagacggtggattgcacattagaaactgtactgtggtgggtccactacca
ttactattgttggctaaagagattgtagtggctccctcaaatgaaaatgatgatgaagat
gatgaaagtgactatgaagatgttgatgctgagagtgatgaagataaaacagggagttat
gatttaccaaattttcagcgtagtgagaaatttatgagctcacccgacaatagtgttaaa
gttgtcattgatagttggcttccttttgagtcgacagcaattgatgttgctcaaatttac
tgtctgagagagcgactttcttctgcaattttgttcaaagtcagacatcctcgaaaacta
cttccggaacatcttggtgcctctttgtatgcaatagcctgtagcctatcgtacgatggt
atgtcagggatcactttgccactggagcctgttgactcactcgcttcgatgattagtgct
actgatatcagtaacccaaatcatgggaagaaaacggggatgaatcagttgccaaaacac
tatcccacgtaccatggcaggcatcagaactttgcctctcatcaaggaggtggcatgaat
agaagtcagaagcttgcgccacaaagctcctctgcggttgcacatgaatcagtcatttat
gggactcgctcaaagggaaactgttctaagcggcagcgtgacaatggacttaaatga
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