Primulina eburnea: 140836696
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Entry
140836696 CDS
T11060
Name
(RefSeq) LOW QUALITY PROTEIN: 30-kDa cleavage and polyadenylation specificity factor 30-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
pebu Primulina eburnea
Pathway
pebu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pebu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
140836696
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pebu03021
]
140836696
03019 Messenger RNA biogenesis [BR:
pebu03019
]
140836696
Transcription machinery [BR:
pebu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
140836696
Messenger RNA biogenesis [BR:
pebu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
140836696
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
Torus
zf-CCCH
zf-CCCH_2
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
140836696
NCBI-ProteinID:
XP_073058504
LinkDB
All DBs
Position
7:complement(3545754..3552740)
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AA seq
685 aa
AA seq
DB search
MDDAEGGLSFDFEGGLDPGPTHPTASVPVIQSLPDPEAGSAALNANNPSNAPVPAAEGIG
GGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLYGECREQDCVYKHTNE
DIKECNMFKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQQLASYNYGNSNKFFQNRNT
NYTQPTDKPHFQQGPNDTNQLEKINTTEDGSVHQQPQLGQQLQQLGGQAQLQNIPNGQQN
QANRTATPLPQGTSRYFVVKSCNVENLELSAHQGVWATQRSNEAKLNEAFDSVENVILIF
SVNKTRHFQGCAKMTSRIGGSVSGGNWKHAHGTAAHYGRNFSLKWLKLCELSFNKTRHLR
NPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSDLMAVSLAAESKREEEMAKGVNLE
NGNENSDIVPFEDNEEEEEEESEEEDESPGQAFGVQGRGRSRGMMWPPQIPLARGARPFA
SVRGFPPNMLGGDGFSYRAMNPDGFPVPDIFGMAAPRGFGPYGPRFSGDFVGPAPGMMFP
GRPSGGFGMVMGPRAPFMGIGAATMTRAGRTVGMPSFYPPPQSQLPQNSYRVNRDMRAPT
SYRSENSDQVKGPEMVGSGGGPEDEGRHQQSGKTQQDDHFSAGNYRNDESSSEDEAPRRS
KHGERKKKSRKWEADSTIISDEPIH
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atggatgatgccgaagggggtttaagctttgacttcgagggcgggttggacccggggccc
acacacccgactgcatccgtacccgtgatccaatcattgccggaccccgaagcgggttcc
gccgccctcaatgccaataacccttccaacgcacccgtgccggcggcggaaggaattggc
ggtggaagacgtagcttccggcagacggtgtgtcgccactggttgcggtcgttgtgcatg
aaaggtgatgcttgtgggttccttcatcagtacgataagtcgcggatgcccgtttgccgg
ttctttcgtctgtacggagagtgccgagagcaggattgcgtatataagcacacgaatgag
gatatcaaggaatgcaatatgtttaaattgggattttgtccaaatggcccagattgtagg
tacaggcatgcaaagctgcctggacctccgcctcctgtggaagaagttctccagaagatc
cagcaattggcttcttacaactacggaaactctaacaaattttttcaaaaccgtaatact
aattatactcagccaacagataaacctcattttcaacaaggacccaatgatacaaatcag
ttggaaaaaattaacaccacagaggatggtagtgtgcatcaacaaccacagctaggacaa
cagcttcagcaactgggtggacaagctcaactacagaatattcccaatggccagcaaaat
caagctaataggactgctacacctctgccccaaggaacatctaggtacttcgtggtcaaa
agttgcaatgttgagaatctggaactctctgctcaccaaggtgtatgggcaactcaacga
agcaatgaggctaaacttaatgaagcttttgactctgttgagaatgtcattttgattttt
tcagtcaataagactagacattttcagggctgtgcaaagatgacatccagaattggtggc
tctgtaagtggaggaaactggaagcatgcacacggaacagctgctcattatggacggaat
ttttctctcaaatggttaaagctctgtgaactatccttcaacaaaactcgccatttgaga
aacccgtacaatgagaacttacctgtgaagataagtagagattgccaagaactggagcct
tctattggtgagcagttggcatccttgctctacctagagccagatagtgatcttatggct
gtctcacttgcagcagaatcaaaacgagaggaggagatggcaaagggagtaaaccttgaa
aatgggaatgaaaactcggatattgtgccctttgaagataatgaggaagaggaggaggaa
gaaagtgaagaagaagatgaaagccctggacaggcctttggagttcaaggcaggggaagg
agtagaggaatgatgtggcctcctcaaatccctcttgcacgtggagctcggccttttgca
agtgttcgaggttttcctcctaacatgttggggggcgatggattttcgtatcgagctatg
aatcctgatggttttcctgtgcctgacatttttggtatggctgctccacgcgggtttgga
ccatatggtcctaggttctctggtgattttgtaggtcctgcccctggtatgatgttccct
ggtcgaccttcaggtggatttgggatggttatgggtccaagggctcctttcatgggtatt
ggagctgctaccatgactagagccggtaggacagttggtatgccttctttttatccacca
cctcaatcacaacttccccaaaattcttatcgggttaacagagatatgagggcaccaact
agttataggagtgagaattcagatcaagttaaaggtccagagatggtaggctccggcggt
ggaccagaagatgaagggcgacatcagcagagtggtaaaactcaacaagatgatcatttc
agtgctggaaactacaggaatgatgaaagcagcagcgaagatgaggctccaagaaggtct
aaacatggagaaagaaagaagaagagtcgtaaatgggaggcggattctaccatcatctcc
gatgaacccatccactga
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