Primulina eburnea: 140837020
Help
Entry
140837020 CDS
T11060
Name
(RefSeq) uncharacterized protein
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pebu Primulina eburnea
Pathway
pebu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pebu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140837020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pebu03019
]
140837020
03041 Spliceosome [BR:
pebu03041
]
140837020
Messenger RNA biogenesis [BR:
pebu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
140837020
Spliceosome [BR:
pebu03041
]
Complex B
Other components
Prp19-related factors
140837020
Complex C
140837020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
TPR_19
PPR
Motif
Other DBs
NCBI-GeneID:
140837020
NCBI-ProteinID:
XP_073059086
LinkDB
All DBs
Position
7:6758279..6764245
Genome browser
AA seq
913 aa
AA seq
DB search
MAIPQELYPSEEDYLYEEEVLRNPNSVKLWWRYLIARGEAPFRKRAIIYERALKALPGSY
KLWQAYLRERLELVRNLPINHAQYQTLNNTFERALATMHKMPRIWIMYLQSLTRQKLISK
TRHSFDRALCALPVTQHDRIWEHYLVFVSQKGVPVETSLRVYRRYLKYDPSHIEDFIEFL
VNSELWQEASERLAGVLNDDRFYSLKGKTKHRLWLELCDLLTQHASEVSGLNVDAIIRGG
IKKFTDEVGRLWTSLADYYIRRGLLEKARDIFEEGMTTVITVRDFSVIFDAYSQFEESML
SIKMENMDVSDDEDNVENENEEKEEEEVDDRLDFEKLKKSMDTFWLKDDKDVDMRLARLE
YLMDRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTYTEAVRTVDPMKAVGKPH
TLWVAFAKLYESHRDVANARVIFDKAVQVNFKAVDHLASIWCEWAEMELRHKNFKGALDL
MRRATAEPSVEVKRRVAADGNKPVQIMLHKSLKLWTFYVDLEESLGSLESTRAVYERILD
LRIATPQIIINYSMLLEDNKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKSK
LERARELFEHAVEMAPAEAVKPLYLQYAKLEEDFGLAKRAMRVYDQATKAVPANEKMGMY
EIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKVMCSKYAELERSLGEIDRSRALYKHA
SQFADPRSDPDFWNKWHEFEVQHGNEDTFREMLRVKRSVSASYSQTHYILPEYLMQKDQM
QTLDEAKDVLKKAGVDDDEMAALERQLVPTLNDAKVKDSGRRLGFVSGGMQNEGESVSNR
EDIELPEESDSEDDEKVEIAQKDVPTAVFGGLVRKREESDKDVEAPDSTISESKDNDAHL
GALERIKRMKRGA
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atggcgataccacaggagttgtatccaagtgaagaggactacctttacgaagaagaagtg
ctccgcaacccgaatagcgtcaaactttggtggcggtatttaattgcccgtggagaagcc
cctttccgaaagcgtgccattatttatgagcgcgctctcaaggcattgccaggaagctac
aagctttggcaagcatacctccgggaacgccttgagctagttaggaatctacctattaat
cacgcacagtaccaaaccttgaacaacacgtttgagcgagctctggcgacaatgcataag
atgcctcgcatttggataatgtatttgcagtcattgactcgtcagaagttgatttccaag
acgcggcactcctttgatagagctttgtgcgctctcccagttacccaacatgataggatt
tgggaacattatttagtatttgtttcgcagaagggtgtacctgttgaaacttcattgaga
gtgtacaggaggtacttgaagtatgacccgagtcatattgaggattttattgagtttttg
gttaattcagagttgtggcaggaagcttcagagaggctggcaggggttttgaatgacgat
cgattttactctctaaaggggaagacaaagcacaggttgtggttggaattgtgcgacctg
ttgacacaacatgctagtgaggtatcagggttgaatgtggatgcaataattcggggagga
attaagaaatttacggatgaggttggcagactttggacatccttggcggattattatatt
aggaggggattactggagaaggccagagatatttttgaggaaggcatgactacagtgatt
acggtgagggattttagtgttatatttgatgcatattctcagtttgaagagagtatgttg
tccattaagatggaaaatatggatgttagtgatgacgaggataacgtggagaatgaaaat
gaagagaaggaagaggaggaggtggatgataggttggattttgagaagttgaagaagagc
atggacacattttggttgaaggatgacaaggatgtggatatgagattggcaaggttggag
tatctgatggataggagaccagagttagctaacagtgtgctcttgaggcaaaatcctcat
aatgtagagcagtggcaccggagggttaagctctttgaagggaaccccacgaagcaaatt
ttgacttacacggaggcagtgaggacagtagatccgatgaaggctgttgggaagccgcat
actttgtgggttgcatttgctaagttgtacgagagtcaccgagatgttgctaatgcccgg
gtgatttttgacaaggcagtacaggtcaattttaaggctgtggaccatctggccagtatt
tggtgtgaatgggcggagatggagctcaggcacaaaaattttaagggtgcactagatttg
atgcgtcgagctactgcagagccatcagttgaggtcaagagaagagtggctgctgatggc
aacaaaccggtgcaaattatgcttcacaagtctcttaagctttggacgttctatgtggat
ttggaggaaagcttgggtagtctggagtcaactcgtgcagtttacgaaagaatattagat
ttgagaatagccacaccccaaattattataaactactcaatgctcttagaagataacaag
tactttgaagatgcttttaaggtttatgagagaggtgtgaagattttcaaatacccccat
gtgaaagatatctgggtcacttacctttcaaagtttgtcaagagatatgggaaatcaaag
ctagaacgagcacgagagttatttgagcatgctgttgaaatggcacctgcagaagcagtg
aaacctctgtatcttcaatatgcaaagctagaagaagactttggtctggctaaaagagca
atgagagtatacgatcaggcaacaaaagctgtccctgctaatgagaaaatgggcatgtat
gaaatatacatagcccgtgctgctgaaatatttggtgtaccgaaaacgcgagagatttat
gaacaagcaatagaatctggcctccctgacaaagatgtcaaggtcatgtgttcgaagtat
gcggagcttgagagaagcctcggagaaattgaccgcagtcgtgcattatataaacacgct
tcacagtttgctgaccctagatctgaccctgacttctggaataagtggcacgagtttgaa
gtgcagcatggaaatgaagatactttccgagagatgctccgagttaaaagaagtgtttct
gcaagctatagccagacacattatatccttccagagtatttgatgcaaaaggatcaaatg
cagacccttgatgaggcaaaggacgtactaaagaaagctggtgtcgatgatgatgaaatg
gctgccctcgaaaggcagttagtccctactctcaacgatgccaaagttaaagatagtggt
agacgattaggatttgtcagtggggggatgcaaaatgaaggcgagtccgtttcaaatagg
gaggatatagagcttccagaagaaagtgattctgaagatgatgagaaggttgagatagcg
cagaaagatgttccaacagctgtgtttggaggtctggtgcggaaaagagaagaatctgat
aaagacgtggaagctcctgattcaactatttctgaaagcaaagataatgatgcccatctt
ggtgccttggagagaataaaaaggatgaagcgaggtgcatag
DBGET
integrated database retrieval system