Primulina eburnea: 140838677
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Entry
140838677 CDS
T11060
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
pebu Primulina eburnea
Pathway
pebu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pebu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
140838677
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pebu03021
]
140838677
03019 Messenger RNA biogenesis [BR:
pebu03019
]
140838677
Transcription machinery [BR:
pebu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
140838677
Messenger RNA biogenesis [BR:
pebu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
140838677
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
Torus
zf-CCCH
zf-CCCH_2
zf-CCCH_12
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
140838677
NCBI-ProteinID:
XP_073061252
LinkDB
All DBs
Position
8:complement(5554554..5561076)
Genome browser
AA seq
688 aa
AA seq
DB search
MDDAEGGLSFDFEGGLDPGPTHPTASVPVIQPSPDPTAGSASAGLSTNNPSNAPVPAPEG
IGGGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLYGECREQDCVYKHT
NEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQQLASYNYGNSNRFFQNR
NTNYAQPVDKPQFPQGPNDTNQLEKINTTGDGSVHHQPQLGLQTQQLGGQAQGQIIPNGQ
QNQAPRTATPLPQGTSRYFVVKSCNVENLELSAQQGVWATQRSNEAKLNEAFDSVENVIL
IFSVNKTRHFQGCAKMTSRIGGSVSGGNWKHAHGTTAHYGRNFSLKWLKLCELSFNKTRH
LRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSDLMAVSLAAESKREEEMAQGVN
VENRNENPDIVPFEDNEEEEEEESEEEDESPGQVFGAQGRGRSRGMMWPPQIPLARGSRP
FAGARGFPPNMMGADGFSYRAMNPDGFPVPDIFGMAAPRGFGPYGPRFSGDFLGPAPGMM
FPGRPSGGFGMIMGPGRAPFMGIGAAAMTRAGRPVGMPPFYPPPQSQLPQNSYRVNRDQR
APTGYRSDSSDQVKGPEMLGSGSGPEVEGRYQQSGKTQQDDHFSAGNYRNDESGSEDEAP
RRSRHGEGKKKRRNLEADAATISDEPIH
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atggatgatgcagaagggggtttaagcttcgacttcgagggcgggttggacccggggccc
acacacccaactgcgtcggtacccgtgatccaaccatcgccggaccccacagcgggttcc
gcatccgccggacttagtaccaataacccttccaacgcaccggtgccagcgccggaagga
attggcggtggaagacggagcttccggcagacggtgtgtcgtcactggttgcgatcgttg
tgcatgaaaggcgatgcctgtggattccttcatcagtacgataaatcgcggatgccagtt
tgccggttttttcgtctgtacggagagtgccgagagcaggattgtgtatataagcacacg
aatgaggatatcaaggaatgcaatatgtataagttgggattttgtccaaatggcccagat
tgtaggtataggcatgcaaagctgcctggacctccgcctcctgtggaagaagttcttcag
aagattcagcaattggcttcttacaactacggaaactcaaacagattttttcaaaaccgt
aatactaattatgcccagccagtagataaacctcagtttccacaaggacccaatgataca
aatcaattggaaaaaattaacacgacaggggatggtagtgtgcatcatcaaccacagcta
ggactgcagactcagcagctgggtggacaagctcaaggacagattattcccaatggccag
caaaatcaagctcctaggactgcaacacccctgccccaaggaacttctaggtactttgtg
gtcaaaagttgcaatgttgagaatctggaactctctgctcaacaaggtgtatgggcaact
cagcgaagcaatgaggctaaacttaatgaagcttttgactctgttgagaatgtcattttg
attttttcagtcaacaagactagacattttcagggctgtgcaaagatgacatccagaatt
ggtggctccgtcagtggaggaaactggaagcatgcgcatggaacaactgctcattatgga
cgaaatttttctctcaaatggttaaagctctgtgaactgtccttcaacaaaactaggcat
ttgagaaacccatacaacgagaacttaccagtgaagataagtagagattgccaagaactg
gagccctctattggtgagcagttggcatccttgctctacctagagccagacagtgatctt
atggctgtctctcttgcagcagaatcaaaacgagaggaggagatggcacagggagtaaac
gttgaaaataggaatgaaaacccagatattgtgcccttcgaagataatgaggaagaggaa
gaggaagaaagtgaagaagaagatgaaagccctggacaggtctttggagctcaaggcagg
ggaaggagtagaggaatgatgtggcctcctcaaatccctcttgcacgcggatctcggcct
tttgcaggggctcgaggttttcctcctaacatgatgggcgctgatggattttcttatcga
gctatgaatcccgatggttttcccgtgcctgatatttttggtatggctgctccccgtgga
tttggaccatatggtcctaggttctctggtgattttttaggtcctgcccctggtatgatg
ttccctggtcgaccttcgggtggatttgggatgattatgggtccagggagggcacctttc
atgggtattggagctgctgccatgactagagccggtaggccagttggtatgcctcctttt
tatccaccacctcaatcacaacttcctcaaaattcttatcgagttaacagagatcagagg
gcaccaacaggttataggagtgatagctcagatcaagtcaagggtccagagatgctaggc
tctggcagtggaccagaagttgaagggcgatatcagcagagcggtaaaactcaacaagat
gatcatttcagtgctggaaactacaggaatgatgaaagcggaagtgaagatgaggctccc
agaagatctagacacggagaaggaaagaagaagaggcgtaatttggaggcagatgcagcc
actatctccgatgaacccatccactga
DBGET
integrated database retrieval system
