Primulina eburnea: 140839382
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Entry
140839382 CDS
T11060
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11 isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
pebu Primulina eburnea
Pathway
pebu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pebu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140839382
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pebu03019
]
140839382
Enzymes [BR:
pebu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
140839382
Messenger RNA biogenesis [BR:
pebu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
140839382
mRNA degradation factors
3'-5' decay
Ski complex
140839382
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
MTR4_beta-barrel
MTR4-like_stalk
Ski2_N
Helicase_C
DEXQc_Suv3
AAA_22
Motif
Other DBs
NCBI-GeneID:
140839382
NCBI-ProteinID:
XP_073062144
LinkDB
All DBs
Position
8:complement(31423007..31470169)
Genome browser
AA seq
1370 aa
AA seq
DB search
MDRVPAADELSFRVRFTGHSGHLRIEPLPPVERQNPLHSIPDFILPPAFPRETPESVKEY
IKEKYLEPRLDDDIFYPEKSGKQWEFDWFDRAKIQLEPSLPRSVVVPLWEMPSRRKKNGE
MDRWEPESVEVDISELTAGADNSGSLPRIVGPAKDFVKGSINSRPFHPGGLVDVDSLRKI
VPDGCYNGEWAQELLNGGPAQVLPPGFKEGLNLGHLKLLKEHSCTWNVTENANADKGTSA
VKLNELSLQFDDLFKKPWEEDVFEYIGDATIPGGTQLESVKESSQIAIEIRDPTEIKTST
EIKDPTKINDLNVAENVIKKPSSLLDEILSSESKELMPRLVGDTNIGGQQPKEEWALSGG
SEEIAERFHELVPDMALTFPFELDSFQKEAIYYLERGDSVFVAAHTSAGKTVVAEYAFAL
ASKHCTRAVYTAPIKTISNQKYRDFCGKFDVGLLTGDVSLRPDADCLIMTTEILRSMLYR
GADIIRDIEWVIFDEVHYVNDIERGVVWEEVIIMLPRHINFVLLSATVPNTFEFADWISR
TKQKKIRVTGTTKRPVPLEHCLFYSGEFFNICENEKIIPQGLKAAKDLYKKKNSATVKSG
AGSGSLPANERARNQKHESSFNAKQAKHSGSQNLMNSGAGWGYQTNASNSWGLRRSEASI
WLLLINKLAKKFLLPVVIFCFSKNRCDKSAHNLTGTDLTTGSEKSEIRIFCDKAFSRLKG
SDRNLPQVVRVQGLLRRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPA
RTVVFDSLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVMCRDDIPEEKDLKHVL
VGSATRLESQFRLTYIMILHLLRVEELKVEDMLKRSFAEFHAQKNLPEKQQLLMRKLAQP
TKIIECIKGEPGIEDYYELYSEAEKYGKHIAEAVMQSPVSQQRLTPGRVVLVKSQWAQDH
LLGVVIKAPSANYKQYIVLVLTPEIPPGWQTPSSSGAKKENTDFQILVPKSKRGLVDDYY
SSASSRKGSGVVNLKLPHHGLAAGVSYEVRGVDNNEFLSICSHEIIIDQVGLLEDVSVGA
YSKTVQQLLILKSDGNKYPPALDPVKDLKLKDLDIVEAYYKWNILLQKMAQSKCHGCVKL
DENIKMARENKRHKEEVNALKFQMSDEALQQMPDFQGRIDVLKETGYIDADLVVQIKGRV
ACEMNSGEELICTECLFENQLDGLEPEEAVAIMSAFVFQQKNTSEPSLTPKLSEAKMRLY
DTATSLGELQSKFKLQVDPQEYARENLKFGLVEVVYEWAKGTPFADICELTDVPEGMIVR
TILRLDETCREFRNAAAIMGNSALHKKMETASNAIKRDIVFAASLYITGV
NT seq
4113 nt
NT seq
+upstream
nt +downstream
nt
atggaccgggtgcctgccgcagatgagttatccttccgtgtgagattcacggggcatagt
ggccatctcaggattgaacctctcccgccggtggaacgccaaaatccacttcattccatt
ccagattttattctcccaccggcattccctagggaaacacctgaatcggtaaaagagtat
ataaaggagaaatatttagaaccgaggttggatgacgatattttttatccggaaaaatct
ggaaagcaatgggagtttgactggttcgacagggccaaaattcagttggagccatctctg
ccacgttccgtggttgttccattatgggaaatgccttctaggcgcaaaaaaaatggggag
atggatagatgggagcccgagtcggtggaggtggatatatcagaattgacagcaggagct
gataactctggttctttgccgcgaattgttggacctgctaaggattttgttaagggaagt
ataaatagtcgtccttttcacccaggtggactggttgatgttgattctttgcggaaaatt
gttccagatggttgttacaatggtgaatgggcacaagaacttcttaatgggggccctgca
caagtacttcccccaggctttaaagagggactgaatctaggtcatctcaagcttttgaag
gagcattcttgcacatggaatgtcaccgaaaatgcaaatgcggacaagggcacatcagct
gtaaagctgaatgagctgtcattgcagttcgatgacttattcaagaaaccctgggaagag
gatgtctttgagtacattggtgacgctactatacctggcggaacacagttagagtctgtc
aaggaatctagtcaaatagcaatcgagataagagatccaactgagataaaaacttcaact
gagataaaagatccgaccaagataaatgatctaaatgttgctgaaaacgtgataaagaaa
ccatcctctcttcttgatgaaatattgtctagtgaatccaaagaattaatgcctagatta
gtcggagatacaaatatcggtggccagcaaccaaaagaggaatgggctcttagtggggga
agtgaagaaattgccgaacgatttcacgaactcgttcctgatatggcacttacatttcca
tttgaactcgattctttccaaaaggaggccatatattatcttgaacggggggattctgtt
tttgtagctgctcatacatcagctggcaagacagttgttgctgaatacgcatttgctctg
gcttcaaaacattgcacaagagctgtatatacagctccaattaaaacgattagcaatcag
aagtacagagatttttgtggaaaatttgatgttggtctacttaccggtgatgttagcttg
aggccagatgctgattgtctcattatgaccactgagatattgagatcaatgctctatagg
ggtgctgatataatacgtgacatagaatgggttatattcgatgaagtgcattatgttaac
gacattgaaagaggggtggtttgggaggaagttattatcatgcttccgaggcatatcaat
ttcgtactgctctcagccactgtgcctaatacatttgagtttgctgattggatcagtcga
acgaagcaaaagaaaattcgtgttactgggaccactaaaagaccagtccctctggagcac
tgtcttttctattctggagagttttttaatatttgtgaaaatgagaagatcatccctcag
gggttaaaagctgccaaagatctgtacaaaaagaaaaattccgccacagttaaaagtggt
gcaggatctgggtctttacctgccaatgaaagggccaggaatcagaaacatgaaagttct
tttaatgcgaaacaggccaaacattctggatctcagaatttgatgaactcgggggctgga
tggggttatcaaaccaatgctagcaatagttggggattgaggagatcagaagcttctata
tggttgctgcttattaataagctagcaaaaaaattccttttgcctgtggttatattctgc
ttttcaaagaaccgatgcgataaatcagcgcataacttgactgggacggacctcacaact
ggctcagagaaaagtgaaattcggatcttttgtgacaaagcattctcaaggctcaaagga
tcggatagaaatctaccgcaggtggtcagagttcaaggccttcttcgaagaggaatcggt
gtacaccatgctggacttctcccaattgtgaaagaagtagttgaaatgctattctgtcgt
ggtgttatcaaggttttgttttcaacagagacatttgcaatgggagtcaatgcccctgca
aggacggttgtttttgattctttaaggaaattcgatggcagggaatttcgacaattactt
cccggagaatatactcagatggctggtcgggctggtaggagaggacttgataaaattggt
acagtagttgtgatgtgtcgtgatgatattcctgaagagaaggatttgaaacatgtttta
gttgggagcgcaactaggcttgaatctcagtttcgattgacatatatcatgatcttgcat
ctgctacgtgttgaagagttgaaggtggaagacatgctgaaaagaagttttgctgaattt
catgctcagaagaatctcccagagaaacagcaacttctaatgcgaaagcttgctcaacca
acaaaaataattgaatgcattaaaggtgaacctgggatagaggattattatgagttgtat
tcggaggctgagaagtatggcaaacatatagcagaggcagtcatgcagtcaccagtttct
caacagcgtttaactccgggaagggtggtattggtgaaatcacaatgggcccaagatcat
ttactaggtgttgtcatcaaagcaccttcagccaattataaacaatacatagtcttagtg
ttgacgcctgaaatacctccgggatggcaaactccatcaagtagtggagcaaagaaagaa
aacacagatttccaaatattagtgccaaaatcaaaaaggggtttggtagatgattattac
tcttcagcatcatctcgtaaaggatctggtgttgtcaatttgaaactacctcaccatggt
ctcgctgctggggtgagttatgaggttagaggagttgacaataatgagtttttatccata
tgcagtcacgaaataattatcgaccaagttgggctcctggaagatgtgagtgttggtgcc
tattctaaaacggtacaacagcttttgattttgaaatcagatggaaataaatacccacca
gctttagatccagtgaaagatctgaagttgaaagaccttgatattgtcgaggcttactac
aaatggaatatcctgttgcagaagatggcgcaaagtaagtgtcatggttgtgtcaaactg
gatgagaacattaagatggctcgagaaaataagcgacacaaagaggaagtgaatgctctt
aagtttcaaatgtcagatgaagctcttcaacagatgcctgattttcagggacgaattgat
gttttgaaggaaactggatacatagacgccgatcttgtagtgcaaattaaaggtcgtgtt
gcttgtgaaatgaattctggggaggagttgatatgtacagagtgcttgttcgagaatcaa
ctggatggcctggaaccagaagaagctgtggctataatgtcggccttcgtattccagcaa
aagaacacatctgaacctagtcttaccccaaagctctctgaagctaaaatgagactgtat
gacacagcaacaagccttggggaacttcaatcaaaattcaaactacaggtcgatccccag
gaatatgcccgagagaatctcaagtttggtctagtcgaagttgtgtatgagtgggcaaag
ggaactccatttgctgatatctgtgaactcactgatgttcctgaaggcatgatagttagg
acgattcttagattggatgaaacgtgccgtgaattcagaaatgctgcagcaattatgggt
aattctgcacttcacaagaaaatggaaaccgcttccaatgcaattaagagggatatcgtc
tttgctgctagcttgtacattactggtgtttaa
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