Primulina eburnea: 140839387
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Entry
140839387 CDS
T11060
Name
(RefSeq) probable NOT transcription complex subunit VIP2
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
pebu Primulina eburnea
Pathway
pebu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pebu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140839387
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pebu03019
]
140839387
Messenger RNA biogenesis [BR:
pebu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
140839387
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
140839387
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
140839387
NCBI-ProteinID:
XP_073062154
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All DBs
Position
8:31939203..31948676
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AA seq
664 aa
AA seq
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MSGLPNTLNGSSSNLSDSTGRSFSPSFSTQSGGGSPVFHNSGNIQGLHNIHGNFNVPNLP
GSLGSRNTVLNNIPSTGVQQAAGNLSGQRFVSNNLPVALSQISHNSVHGHSGLPNRGGIS
VVGNQGYSSSTNGVGGSIPGILPTSAAIGNRTAVIGLGVSPALANAGQRITSSMGNIIGG
GNMGRNISSAGGLSVPGLTSRLNLTANSGSGNLNMQGQNRLMGGVLQQGSPQVLSMLGNS
YSSAGGPLSQNLVQAVNNLNSMGILNDVNTHDGASFDINDFPQLTSRPSSSGGPQGQLGS
LRKQGLGPIVQQNQEFSIQNEDFPALPGFKGGNADYSMDLHQKEQLHDSSVSMMQPQHFS
MGRSAGFNFGPTFSSHRPQQQQQQHTPSASGTGGPFSNVNNQDLLHLHSSEIFPSSNSNY
HAQSGGPQGLGLRPLNSPSSVSGIGSYDQLLQQYQQHQSQSLFRLQQIPPVSQQYREQGM
KQMQAAQTAPDLYGLHGLLNVIRMSDPDLTSLALGIDLTTLGLNLNSTENLYKTFASPWS
DEPAKGDPEFIVPQCYYTKQPPPLSQVYFSKFQLDTLFYIFYSMPKDEAQLYAANELYNR
SWFYHREHRCWYMRVTNMEPLVKTNTCERGSYICFDPNTWETIRKENLILHYDMLEKRPA
LPQH
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgtcagggttacctaatacacttaatgggtcatcttcaaatctctccgacagcacagga
cgctctttttctccatctttctctacacagtctggtggcggctctcctgtttttcataac
agtggaaatattcagggattgcacaacattcatggaaacttcaatgttcctaacttacct
ggttcacttggatcacgaaatacagtcttgaataacattccttcaaccggggtgcaacaa
gctgctggcaacctttctggtcaacggtttgtttcaaataaccttccggttgccctttca
cagatttctcataatagtgtgcatggccattcggggctgccaaatagaggtggtataagt
gttgttggcaaccaggggtatagtagcagcaccaacggagttggaggttctatccctggg
attctcccaacctctgctgcaattggtaatcggactgctgttataggtttgggagtgtct
cctgctctggcaaatgcagggcaacggattacaagctccatggggaacataattggtggc
ggaaacatgggcagaaatattagctcagctggaggactctctgttcctgggcttacgtct
cgcctaaatttaactgccaacagcggttctggaaatctaaatatgcagggacaaaataga
ttgatgggtggtgtgcttcagcaaggttccccacaggtactatccatgttaggaaattcc
tattctagtgctggtggtcccttatctcaaaacctcgttcaagctgtcaataatctaaat
agtatgggtatcttgaatgatgtgaatacccatgatggtgcctcttttgatatcaatgat
ttccctcaactgactagtcgccctagttcttctggaggtcctcaaggacaacttggttcc
ctgcggaaacaaggccttggccctattgttcaacaaaatcaagagttcagcattcaaaat
gaagattttccagcgttaccaggatttaaaggtggcaatgctgattattcaatggacctg
caccagaaagaacaacttcatgatagttctgtatctatgatgcaacctcaacatttttct
atggggcgatctgctggtttcaattttgggccaacattttcatctcatcggccacagcag
cagcagcaacaacatactccttcagccagcggcactggtggacctttttcaaatgtgaat
aaccaggatctactccatttacatagttcagagattttcccgtcatcgaattccaactat
catgcgcagagtggtggaccccaaggcttaggattgagacctctgaattctcccagttca
gtgtccggcataggttcatacgaccaacttttacagcagtatcagcagcatcagagtcaa
tctctatttcgacttcagcaaattcctcccgttagtcaacaatatagggaacagggaatg
aaacaaatgcaggctgcacagacagctcctgacctttatggtttgcacggtttgttaaac
gtgataaggatgagtgaccctgatttgacatctcttgctcttggaattgacctgactaca
ctaggattgaacttgaattccactgaaaatctctacaagacgtttgcttccccatggtca
gatgagcctgccaagggagatccggagttcatcgtgccacaatgttactatactaaacaa
ccgccacctcttagtcaagtgtacttctcaaagttccaattagacacactgttctatatt
ttttatagtatgccaaaggatgaagcccaactatatgccgctaatgagttatataacaga
agctggttctaccacagggagcaccgttgttggtacatgagggttactaatatggagcct
cttgtgaagacaaacacatgtgaaaggggctcttatatttgttttgatccaaacacgtgg
gagacaattcgcaaggaaaatttaattcttcattacgacatgttggaaaaaagaccagct
ctacctcagcattag
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