Primulina eburnea: 140842321
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Entry
140842321 CDS
T11060
Name
(RefSeq) LOW QUALITY PROTEIN: DNA mismatch repair protein MSH6
KO
K08737
DNA mismatch repair protein MSH6
Organism
pebu Primulina eburnea
Pathway
pebu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pebu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
140842321
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pebu03400
]
140842321
DNA repair and recombination proteins [BR:
pebu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
140842321
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
YL1
PTM_DIR17_Tudor
Tudor_KDM3B
Motif
Other DBs
NCBI-GeneID:
140842321
NCBI-ProteinID:
XP_073066209
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Position
10:complement(1367524..1376968)
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AA seq
1307 aa
AA seq
DB search
MASSKKTSNGRSPLVNQQSQITAFFTKKPETVSSSPSPSPNPVLRKQNPHSSSNTSSFQS
PSPNSITTSHLPPKRKKPMLVVGTDLSTLHSEKSNSDKKTYGPEVVERRIRVYWPLDKSW
YEGCVKSFDKLSGKHLVLYDDSEEEMLNLSGENIEWVDGEPAKKLRRLRKISVVEDEEDD
TEKFEDDSEDEDWVANVEKAAMEEEDRLDDMDLDEEESGKCDRNKKVYPRKQSGSGSGSG
GNKLGSNASKKKSKFSENLKSSNQKVPPAVNGHKLPNPMKDSSADNGINISIPDCSLGGN
AADRFAMRNMEKLGFLEKDQRDAKRRRPGDVDYDSRTLYLPPNFVKSLTEGQRQWWEFKS
KHMDKVLFFKMGKFYELFEMDAHVGAKELGLQYMKGEQPHCGFPERNYSTNVEKLARKGY
RVLVVEQTETPEQLELRRKENGCKDKVVKRDICAVVTKGTLTEGEILSTTPDASYLMAVT
ESCQILANQRGVHIFGVCVVDVATSNIILGQFRDDSDCTSLCSLLSELRPVEIIKPAKLL
CPETEKALIRHTRNPLVNELVPFSEFWNSEKTIREAKSIYQRXGDPSCIETVNNVVVNSS
LNCADSKCLPEVLSDLVNLGENGSQALSALGGTLFYLRQAFLDETLLRFAKYELLPCSGF
GEMIQKPYMVLDAAALENLEIFENSRNGESSGTLYAQLNHCATAFGKRLLRSWLARPLYH
LEQIKERQDAIAELKGVGRPYVLDFRKELIRLPDMERLLACIFASSEANGRNAIKVVLYE
DASKKQLQEFISALRGCELMIQSIASFGGNLGNVESRLLHHLFAPGAGIPDISLILRHFK
DAFDWEEADNSGRIIPREGADVEYDAECQKLNDIESDLRKHLKEQRKLLGDASISYVTVG
KDAYLLEVPESLSDRIPKEYESRSSKKGYFRYWSPVIKKLLGELSQAESEKESKLKSILR
RLVERFCENHCKWRQLVSTIAELDVLISLSIASEYYEGKTCRPILSASFANEVPHVSAKS
LGHPVLKGDTLGDGTFVTNDIRLGGSDNASFILLTGPNMGGKSTLLRQVCLAVILAQIGA
DVPAESFELSPIDRIFVRMGAKDHIMAGHSTFLTELLETASMLSSATQSSLVALDELGRG
TSTSDSQAIAASVLEHFVSTVQCRGMFSTHYHKLAIEHQKNPKVSLCHMACQVGKGITGL
EEVIFLYKLRNGTCPRSYGVNVARLAGLPDAVLQRAAKMSTELEEGSHGKISGVNSPIQS
WEDDASLVIQNLSKVAANKNWESLSKTIVVESLINLQNRARLLLKQR
NT seq
3924 nt
NT seq
+upstream
nt +downstream
nt
atggcctcatcgaagaagacgagcaacggtcgctcgccgctggtcaatcagcagagccaa
atcaccgctttctttaccaagaagccggaaacagtgtcttcctctccttctccgtcgccc
aacccagttctccgtaagcaaaaccctcattctagctcaaatacaagttcctttcaaagc
ccgagcccgaactcaatcaccacatcgcatttgccgcccaagcgcaagaagcctatgctt
gtcgttggcacggacttgtcgacccttcattctgaaaaatccaactccgataaaaaaact
tatggaccagaggttgttgaaaggaggattagagtttattggccattagataagtcttgg
tacgaaggctgcgttaaatcgtttgataagctatcggggaagcatttggtgctgtatgat
gattccgaggaggaaatgttaaatctttcgggggagaacattgagtgggttgatggggag
ccagctaagaagcttcgtagacttagaaagatttcagttgtggaagatgaagaggatgac
accgaaaagtttgaagatgattcagaggatgaggattgggtggcaaatgtggaaaaagca
gctatggaagaggaggatcggttggatgatatggatttggatgaagaggaaagtggaaaa
tgtgatagaaataagaaagtgtatccaaggaagcaaagtgggagcgggagtgggagcgga
ggaaacaaactggggtccaatgctagtaagaagaagagcaagttttccgaaaatctaaag
agcagtaaccagaaggttccccccgctgtcaatgggcacaagctacccaatcctatgaaa
gatagtagtgccgataatgggataaatatatctataccagattgttccttagggggaaat
gcagccgatagatttgccatgcgcaatatggagaagctaggcttccttgagaaggatcag
agggatgccaaaagaagacgtcctggggatgtggactatgactcaagaaccctttacctg
cctccaaacttcgtaaaaagtttgactgaaggccaaaggcaatggtgggagtttaagtca
aagcacatggataaggttctttttttcaagatgggaaagttctatgaactttttgaaatg
gatgcgcacgttggagcaaaagaacttggtttgcaatacatgaagggggagcaacctcac
tgtgggtttccagaaaggaactactctacaaatgtagagaagctggctagaaagggatat
cgtgttcttgttgtggagcaaacagagacaccggagcagcttgagcttcgtcgaaaggag
aatggctgcaaagataaggttgttaaaagggacatttgcgctgtggtcacaaaaggaact
ttaacagagggagaaatactttcaaccactcccgatgcttcttatcttatggcagtgacc
gaaagttgtcagattttggcaaatcaacgaggagtccatatctttggtgtttgcgtggtt
gatgtcgctacaagcaatattattcttggacagttcagggatgattcagattgcacttcc
ttatgctcgctattgtctgaactaagacctgtggaaattatcaaacctgctaagctgcta
tgtcctgagactgaaaaggcgctgattaggcatacaagaaatcctttagtcaatgagttg
gttcccttctctgagttctggaattctgagaaaacaattcgtgaagctaagagtatctat
cagcganttggtgatccgtcatgtattgaaactgtaaataatgtcgtagtcaactcgtct
ttgaattgtgctgattctaaatgtcttccagaggtattatctgaccttgtgaatttgggt
gagaatgggagtcaagcactctcagctcttggtggtactcttttctatttgcgacaagcg
tttttggatgaaaccctactcagatttgctaaatatgagttgcttccatgttctggtttt
ggtgaaatgattcaaaaaccatacatggttcttgatgctgctgcactagaaaatcttgag
atatttgaaaacagcagaaatggggagtcttctggcacattatatgctcaattgaatcat
tgtgctacagcatttgggaaaaggttacttagatcatggcttgccaggcctttgtatcat
ctcgagcaaattaaggaacgacaggatgctatagcagaattgaagggagttggtcgacca
tatgtgcttgattttagaaaggagttgatcaggctccccgacatggaacggctgcttgca
tgcatctttgctagcagtgaagctaatggtaggaatgcaattaaagttgtgttatatgag
gatgcatcaaagaagcagcttcaagagttcatttcagctcttcgcggatgtgaactgatg
attcagtcaattgcatcatttggtggcaatttgggaaatgttgaatctaggctattacat
catcttttcgctcctggtgctgggattcctgatatcagtttgattttgaggcatttcaag
gatgcctttgattgggaggaagcagataattcagggcgtataatacctcgagagggggct
gatgttgagtatgatgctgagtgtcaaaaattgaatgacattgaatccgatctgagaaaa
catttgaaagaacagcgtaaattacttggcgatgcatccatcagttatgtaacggttgga
aaagacgcgtatcttttggaagtgccagaaagtttgtctgaccgcattccaaaggagtat
gagtcaagatcatctaagaagggttacttccggtactggagtccagttattaaaaaattg
ttaggagaactatctcaagctgaatccgagaaggagtcaaaattgaagagcatcctgcgg
agattggttgaacgattttgtgagaatcactgtaaatggagacaattggtctcaactatt
gcagaactggatgttttgatcagcttatctattgcaagtgaatactatgaaggaaaaaca
tgtcgtccaattctatctgcttcttttgccaatgaagtgccacacgtgagtgctaaaagt
ttggggcatcctgttcttaagggtgatactttaggagatggtacctttgtcaccaatgat
atcagacttggtggttctgacaatgccagctttatacttcttacgggtcctaacatgggt
gggaagtctactctcttacgccaggtttgcttggctgtgattttggcccagataggagct
gatgttccagcagaaagttttgagctgtctcctattgaccgaatttttgttcgaatggga
gctaaagatcatattatggctggccacagtacattccttacagaacttttagaaactgct
tctatgctgtcttcagctactcaaagttcacttgtggcattggatgagctgggacgaggg
acatcaacatcagatagccaagccattgctgcatcagttcttgaacattttgtcagcact
gtacaatgccggggaatgttttctacacattatcacaaattagcaattgagcaccaaaaa
aatcccaaggtctccctctgtcatatggcatgccaagtcgggaaaggaatcacgggttta
gaggaagttatcttcctttataaattgaggaatggaacgtgccctagaagttatggtgtg
aatgttgctcgattagctggacttcctgatgcggtactacaaagggcagcaaaaatgtct
acggagttggaagaaggaagtcatggcaaaatctcgggagtgaactcacccattcaaagt
tgggaagatgatgcctcattggtcatccaaaacttatcgaaagttgcagctaacaaaaac
tgggagtctttgtctaaaacaattgttgttgaatctttgatcaacctgcagaatcgagca
aggttgcttctgaaacaacggtag
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