Primulina eburnea: 140842634
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Entry
140842634 CDS
T11060
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pebu Primulina eburnea
Pathway
pebu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pebu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140842634
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pebu03019
]
140842634
03012 Translation factors [BR:
pebu03012
]
140842634
Enzymes [BR:
pebu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
140842634
Messenger RNA biogenesis [BR:
pebu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
140842634
Translation factors [BR:
pebu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
140842634
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
T2SSE
Rad17
nSTAND3
AAA_19
Motif
Other DBs
NCBI-GeneID:
140842634
NCBI-ProteinID:
XP_073066766
LinkDB
All DBs
Position
10:4089789..4098634
Genome browser
AA seq
1047 aa
AA seq
DB search
MSPRLLTNSLGGCGVFCLLQLRNRLSFAVSAKVIGCRNFLEGHFNRISTLAAMSHRPNFQ
GGRRGSGGRSGGRGGGGGGRGVGRGGGGEQRWWDPAWRAERLRQKAAEMEVMDQNEWWGK
LEQMKIGGEQEMVIRRNFCRDDQQILGDMAYQLGLYFCVYGKGKALVVSKVPLPNYRADL
DERHGSNKKEISMSMETETRVGNLLNTSKGTTSAGFISSTSADTVNELSKTVEIGRQSPM
LEIETGLNELNIELKQKQEKMRESDNVKAMLSFREKLPAFKMKSEFLKAVAAEQVLVVSG
ETGCGKTTQLPQFILEEEISSLRGGNCRIICTQPRRISAISVAARVSSERGEKLGETVGY
QIRLESKRSDETRLLFCTTGVLLRQLVEDPNLTGITHLLVDEIHERGMNEDFLLIILRDV
LPRRSDLRVILMSATINADLFSRYFGNAPTIHIPGLTFSVKEFYLEDVLEKTCYCLKTEL
DNFPGNSRRNRQSQGSKKDPLTELFEDVDINSYYKQYKASTRQSLAAWSGSQLDLDLVKA
TIEHICCNEGNGAILVFLSGWDEISNLLDKVKASNFLGDQNKFLVLPLHGSMPTVNQREI
FDNPPPNVRKIILSTNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLFPSWISKASA
HQRRGRAGRVKPGFCYRLYPKIIHDAMLQYQLPEMLRTPLQELCLHIKRLQLGAISTFLS
KALQPPDALSVENAIELLKTIGALNDREELTPLGRHLSTLPLDPNIGKMLLMGSIFQCLD
PALTIAAALSDRNPFVFPINRKEEATDAKRSFAGDSCSDHIALLKAFEGWKDAKCNRMEK
SFCWDNFISPITMQMVEDMRNQFLDLLSDIGFVDKSRGAKAYNQYGDDMEMVCAMLCAGL
YPNVVQCKRRGKRTALYTKEVGKVDIHPGSVNAGVHLFPLPYMVYSERVKTSSIYIRDCT
NISDYALLMFGGNLIPSNSGDGIEMLGGYLQFSASETVLDLIRKLRGELDKLLRRKIEEP
GFDIVVEGKGVVAAVIELLQSQNVRYR
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccccgtcttcttaccaactccctcggcggttgcggtgttttctgccttcttcag
ttacggaaccgtctctcatttgcggtctcggcgaaagtgattggttgccggaacttcttg
gaaggacattttaatcgaatctcaactttagctgccatgtctcaccgtccaaacttccaa
ggaggccgtcgtggcagtggaggccgttctggagggagaggtggcggaggaggcggcaga
ggtgtgggtcgcggaggtggtggggagcagcgatggtgggaccctgcctggcgagctgag
cgtctccgtcagaaagcggcggagatggaggtgatggaccagaatgaatggtggggaaag
ttggaacagatgaagattggaggagagcaggagatggtaattaggaggaatttctgtaga
gatgatcagcaaatcctgggtgatatggcttatcagttgggtctttacttttgtgtgtat
ggtaaagggaaggcacttgttgtgagcaaagtaccattgccaaattatcgtgcagatctt
gatgaacggcatggctccaacaagaaagagatcagtatgtccatggagactgagacaaga
gttggaaatttattgaatacttccaaggggactacatctgctggatttatttcttctaca
tctgctgatactgtcaatgaactatccaaaacagttgaaattgggagacaatcaccaatg
ttggagattgagactggcttgaatgaactcaatatagaactaaaacagaaacaggaaaag
atgagggaaagtgataatgtgaaggcaatgttgtcatttagagaaaagctaccggcattc
aaaatgaaatcagaattcttgaaagctgttgcggcagaacaggtgctggtagtttcagga
gagactggttgtgggaaaaccacccagcttcctcagtttatcctggaagaggaaatatca
tctctacgtggtggtaattgtcgcataatatgcactcaacctcgtagaatatctgcgata
tcagttgcagctcgagtatcatctgaaaggggagaaaagcttggtgaaactgtaggttat
caaattcgtcttgaatcaaagcgttctgatgaaacaagattgctattttgcaccactgga
gtattacttcggcagctggtcgaggaccctaatttaacaggaattactcatttgctggtg
gacgaaattcatgaaagaggcatgaacgaggactttttgttaataatattgcgtgatgtt
ctacctcgtcgttctgaccttcgtgttatcttgatgagtgccactatcaatgctgactta
ttttcccgctactttggaaatgcacccactatccatatacctggattgaccttttccgtg
aaagaattttatttagaagatgtgttggagaaaacatgctactgtcttaaaacagagctc
gacaattttccaggaaattcaagaagaaatcggcaatcacaaggctctaaaaaggatcct
ttgacagaattatttgaggatgtggacatcaattcctactacaaacaatacaaagcaagc
accaggcaatctcttgcagcttggtctggttctcagctggatttagacctcgttaaagcg
actattgaacacatttgttgcaatgaaggtaatggagcaattcttgttttccttagtggt
tgggacgaaatttcaaatctgcttgataaagtcaaagcaagcaactttcttggagatcaa
aataagtttttggtacttcctcttcatggttcaatgcctactgtcaatcagcgtgaaatt
tttgataaccccccgcctaatgtgagaaagataattttatctaccaacattgctgagagt
agtataaccatagatgatgttgtgtacgttgttgactgtggaaaggcaaaagagactagc
tacgatgctcttaataagttggcttgtctttttccttcatggatatctaaggcgtcagcg
caccagagacgtggccgtgcgggtcgtgtgaaacctggattttgctataggttatatcct
aaaataatccacgatgctatgctccagtatcagctgcctgaaatgcttcgaacacctctg
caagagttatgtctacatatcaagaggttgcagcttggagcaattagtacttttttgtcc
aaggcacttcaaccacctgatgctctctccgtggaaaatgccattgaacttctcaaaaca
attggggccctaaatgatagagaagagcttacaccactcggacggcatctcagcactttg
cctctggacccaaatattggaaaaatgcttcttatgggatccatctttcagtgcctcgat
cctgcattaacaatagctgctgctctttctgatcgcaacccatttgtctttccaataaat
aggaaagaggaagccactgatgcaaagagatcctttgctggagattcttgtagtgatcac
attgcccttctgaaggcatttgaaggatggaaagatgctaaatgcaacaggatggaaaaa
tcattttgttgggataattttatatcaccaataaccatgcaaatggtggaggacatgaga
aatcagtttctggatttactctctgacattggttttgtggataaatcccgtggtgcaaaa
gcatataaccaatacggtgacgacatggagatggtatgtgcgatgctctgtgctggactc
tacccaaatgtggtgcagtgcaaacgaagaggaaagcgaacagcattgtacacgaaagaa
gttgggaaagttgacattcatccaggttcggtcaatgctggcgttcaccttttccctctt
ccatacatggtttacagcgaaagggttaaaaccagcagtatatacattagagactgcact
aacatatctgattatgctctgctgatgttcggtgggaacctcattccgagcaatagtgga
gatggcattgaaatgcttggcggatatcttcaattttctgcatcggagactgtattagac
ttgatacggaaactgcgtggggagcttgacaaacttctaagaaggaagatcgaggagcct
ggctttgacattgtagtcgagggaaagggcgtagttgcggctgtaatcgagttattacaa
agtcaaaatgtgcggtacaggtga
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