KEGG   Primulina eburnea: 34730809
Entry
34730809          CDS       T11060                                 
Symbol
rpoC2, CSD74_pgp078
Name
(RefSeq) RNA polymerase beta'' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
pebu  Primulina eburnea
Pathway
pebu03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pebu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    34730809 (rpoC2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pebu03021]
    34730809 (rpoC2)
   03400 DNA repair and recombination proteins [BR:pebu03400]
    34730809 (rpoC2)
Enzymes [BR:pebu01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     34730809 (rpoC2)
Transcription machinery [BR:pebu03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     34730809 (rpoC2)
DNA repair and recombination proteins [BR:pebu03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      34730809 (rpoC2)
SSDB
Motif
Pfam: RNA_pol_Rpb1_5 RNA_pol_Rpb1_4 RNA_pol_Rpb1_3 CKI
Other DBs
NCBI-GeneID: 34730809
NCBI-ProteinID: YP_009437458
UniProt: A0A291F705
LinkDB
Position
Pltd:complement(16477..20622)
AA seq 1381 aa
MEVLMAKRANLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS
LGIDDLLTIPSKRWLVQDAEQQSLILEKHHYFGNAHAVEKLRQSIEIWYATSEYLRQEMN
PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIAIRRTDCGTIRGISVSPHNGIMP
ERIFIQTLIGRVLADDIYMGTRCIATINQDIGIGLVNRFITFRAQPIAIRTPFTCRSASW
ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPS
NGKIKFNEDFVHPTRTRHGHPAFLCSINLYVTIESKDIRHNVNIPPQSFLLVQNDQYVES
EQVIAEIRAGTSTLNFKEKVRKHIYSNSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI
LLGGTCRSSLVSLSLHKDQDQMSAHSRSVKRRSTSNLSGTNDQSRQKFFTSDFFAKKEER
IPDYSYLNRIRCTGCSNLIDPTILDQNSDLFSKRRRNRFIIPLQSIQERENDLMPPSDSN
ISIEIPINGIFRRNSILAYFDDPRYRRRSSGISKYGTLEMHSIIKKEDLIEYRGDKEFRP
KYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIEVDTQITLNIRSQVGGLVRVEKKKKRI
ELKIFSGDIHFPGETDKISRHSGILIPPGAGKQDSKESKKWKNWIYVQRITPSKKKSFVL
VRPVVTYEITDGINLAALFPPDLLQERDNVQLRVVNYILYGNGKPIRGISDTNIQFVRTC
LVLNWDQDKKSSSSEAARASFVEIRANGLIRHFLRIDLVKSPISYRNDLAGSGLLSDNGS
DCTNINPFSFIYSKARIQQPLNQITIHTLLNRNTGLQSLIILSSSNCFRMGPFNDVKYQN
VIKESIKMTKDPLISIKNPLGPLATAFLILNVYSFFHLLTHDQILVNNYLQLDNLKQTFQ
VIKYYLMDENEKIYNPDPCSNIIFTLNWYFFHPHFCQTILSLGQFICENICIAKSAPHLK
SGQVILVQVDSVVIRPAKAYLATPGATVHGHYGEILYEGDTLITFIYEKSRSGDITQGLP
KVEQVLEVRSIDSISINLEKRVESWNERITIILGMPWAFLIGAELTIVQSRISLVNKIQK
VYRSQGVQIHNRHIEIIVRQITSKVLVSEDGLSNVFSPGELIGLLRAERMGRALEEAVCY
RAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTG
LKGLVPPSKQHNKSLLETKKNNLFEGEMKDILFHHKKLFDSFLSKNFHDTSEESFIGFND
S
NT seq 4146 nt   +upstreamnt  +downstreamnt
atggaggtacttatggcaaaacgggccaatctggtatttcacaataaagtgatagacgga
actgccatgaaacgacttattagtagattaatagatcacttcggaatggcatatacatca
cacatcctggatcaagtaaagactctgggttttcaacaagctactgctacatccatttca
ttaggaattgatgatcttttaacaataccctcgaagagatggttagttcaagatgctgaa
caacaaagtttgattttggaaaaacaccattattttgggaatgcacatgcagtagaaaaa
ttacgccaatccattgagatatggtatgccacaagtgaatatttgcgacaagaaatgaat
cctaattttaggatgactgacccctttaatccagtccatataatgtctttttcgggagct
agaggaaatgcatctcaggtacatcaattagtaggtatgagaggattaatgtcggatcct
caaggacaaatgattgatttacccattcaaagcaatttacgtgaagggctctctttaaca
gaatatataatttcttgctacggagcccgtaaaggggttgtggatactgctgtacgaaca
tccgatgctggatatctcacgcgccggcttgttgaagtagttcaacacattgctatacgt
cgaacagattgtggtactatccgtggtatttctgtgagtcctcataatgggatcatgcca
gaaaggatttttatccaaacattaattggtcgtgtattagccgatgatatatatatgggc
acacggtgtattgctactataaatcaagacattgggattggacttgtaaatcgattcata
acctttcgagcacaaccaatagctattcgaactccttttacttgtagaagtgcatcttgg
atctgtcgattatgttatggtcggagtcctactcatggtgacttagttgaattgggcgaa
gctgtaggtattattgcaggccaatcgattggagaaccgggtactcaattaacattaaga
acttttcataccggcggagtattcacggggggtactgcagaacatgtgcgagccccttct
aatggaaaaatcaaattcaatgaggattttgttcatccgacacgtacacgccatggccat
cccgcgtttctatgttctataaacttgtatgtaaccattgagagtaaagatattcgacat
aatgtaaatattccaccccaaagttttcttttagttcaaaacgatcaatatgtagaatca
gaacaagtgattgctgagattcgcgcaggaacctccactttgaattttaaagaaaaggtt
cgaaaacatatttattctaactcagatggagaaatgcactggagtaccgatgtgtatcat
gcacccgaatttacatatggtaatgttcatctattaccaaaaacaagtcatttatggata
ttattaggagggacgtgcagatctagtctagtctccctttcgctccacaaggatcaagat
caaatgagcgcgcattctcgttctgtcaagagaagatccacttctaacctctcaggaacg
aatgatcagtcgagacaaaaattctttacttcagatttttttgctaaaaaagaagaaagg
attcctgattattcataccttaatcgaattagatgtactggttgttctaatctcatagat
ccaaccattctcgaccagaattctgatttattctcaaagaggcgaagaaatagatttatc
attccactccaatcgattcaagaacgcgagaatgacctaatgcctccttcagattcaaat
atctcgattgaaatcccgataaatggcattttccgtagaaatagtattcttgcttatttc
gacgatccgcgatacagaagaaggagttcgggtatttctaaatatgggactctcgaaatg
cattcaatcatcaaaaaagaggatttgattgagtatcgaggagacaaggaatttaggccc
aaatatcaaatgaaagtggatcggttttttttcattcccgaggaagtgcatatcttaccc
ggatcttcttccataatggtacggaacaatagtatcattgaggtagatacacaaattact
ttaaatataagaagccaagtaggcgggttggtccgagtagagaaaaaaaaaaaaagaatt
gaactaaaaatattttctggagatatccattttcctggagagacagataaaatatcccga
catagtggcattttgataccaccaggagcaggaaaacaagattctaaggaatccaaaaaa
tggaaaaattggatctatgttcaacgaatcacacctagtaagaaaaagtcttttgtttta
gttcggcctgtcgtcacatatgaaataacggacggtataaatttagcagcgctttttccc
ccggatctgttgcaggaaagggataatgtgcaacttcgagttgtcaattatatactttat
ggaaatggtaaaccaattcgagggatttctgataccaatattcaattcgttcggacttgt
ttagtattgaattgggaccaagacaaaaaaagctcttctagtgaagcagcccgtgcttcc
tttgttgaaataagggcaaatggtttgattcgacatttcctacgaatcgacttagtgaaa
tcccctatttcatataggaatgatttagcaggctcaggattgctctctgataatggatca
gattgcaccaatatcaatccgttttctttcatttattccaaggcaagaattcaacaaccc
cttaatcaaataactattcatacgttgttgaatagaaatacgggattacaatcattgata
attttgtcatcatccaattgttttcgaatgggtccattcaacgatgtaaaatatcaaaat
gtcataaaagaatcaatcaaaatgacaaaagatcctctaatttcaattaagaatccgctg
gggcctttagcaacagcctttctaattttgaatgtttattcatttttccatttactaact
catgatcagatcttggtaaacaactatttgcaacttgacaatttaaaacagacttttcaa
gtaattaaatattatttaatggatgaaaacgagaaaatttataaccccgatccatgcagt
aacattattttcactttgaattggtattttttccatccccatttttgtcaaacaatactt
agtcttggtcagtttatttgtgaaaatatatgtatagccaaaagtgcaccacacctaaaa
tcgggtcaagttatacttgttcaagtcgattctgtagtaatacgacccgctaaggcttat
ttggccactccaggcgcaactgttcatggccattatggggaaatcctgtacgaaggagat
actttaattacatttatatatgaaaaatcgagatctggtgatataacccaggggcttcca
aaagtggaacaggtgttagaagtgcgttcgattgattcaatatcgataaatctagaaaag
cgagttgagagttggaacgaacgtataacaataattcttggaatgccgtgggcattcttg
attggtgctgagctaactatagtgcaaagtcgtatctctttggttaataagatccaaaag
gtttatcgatcccagggggtgcagattcataataggcatatagaaattattgtacgtcaa
ataacatcaaaggtgttggtttcagaagacggactgtctaatgttttttcacccggagaa
ctaattgggttgttgcgagcggaacgaatggggcgcgcgttggaagaagcggtttgttac
cgagccgtcttgttgggaataacaagagcatctctaaatactcaaagtttcatatctgaa
gcgagttttcaagaaactgctcgagttttagcaaaagccgctctccggggtcgaatcgat
tggttgaaaggcctgaaagagaacgttgttttggggggtatgatacctgtcggtaccgga
ttgaaaggattagtgcccccttcaaaacaacataacaagagccttttggaaacaaaaaag
aataatctattcgagggggaaatgaaagatattttgtttcaccacaaaaaattatttgat
tcttttctttcaaagaatttccatgatacatcagaagaatcgtttataggatttaatgat
tcctaa

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