Pectobacterium parmentieri SCC3193: W5S_0220
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Entry
W5S_0220 CDS
T02514
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pec
Pectobacterium parmentieri SCC3193
Pathway
pec03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pec00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
W5S_0220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pec03021
]
W5S_0220
03400 DNA repair and recombination proteins [BR:
pec03400
]
W5S_0220
Enzymes [BR:
pec01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
W5S_0220
Transcription machinery [BR:
pec03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
W5S_0220
DNA repair and recombination proteins [BR:
pec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
W5S_0220
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
SPG4
Motif
Other DBs
NCBI-ProteinID:
AFI88351
UniProt:
A0A0H3HWX7
LinkDB
All DBs
Position
243388..247416
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQHGLEAAFRSVFPIK
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALGYSTEQILDLFFDKIVYEINGNKLQMD
LVPERLRGETASFDIEANGKVYIEKGRRITARHIRQLEKDDIERIEVPVEYIAGKVLSKD
YIDESTGELIGAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGAYMSETVRVDPSSDRL
SALVEIYRMMRPGEPPTREAAETLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SKDDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRENVVT
DEIHYLSAIEEGNFVIAQANTNLDEEGRFIDELVTCRNKGESSLFSRDQVEYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGTVQYVDASRIVIRVNDDEMYPGEAGIDIYNLTKYTRSNQNTCISQMPCVSLGEPVERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTIIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
TEELQILEAGLFGRIHAVLVSGGVEADKLDKLPRERWLELGLTDEEKQNQLEQLAEQYDE
LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGEKINAMLKQHEEVTK
LREFIQRAYDLGDDVRQKVDLSTFSDEEVMRLAENLKKGMPIATPVFDGAKEKEIKELLQ
MGGIPTSGQITLYDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELEEK
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaaacgtccacaa
gttttggacataccttatctcctttctatccaacttgactcgttccagaagtttatcgag
caagacccggaaggccagcacggtttggaagctgcattccgttcagttttccccataaaa
agctatagcggtaattcagagctgcaatacgttagctatcgcttaggcgagccagtattt
gacgttaaagaatgtcagatccgcggtgtgacgttctctgcgccgctacgcgttaaactg
cgcctggtgatctacgagcgcgaagcgcctgaaggcaccgttaaagacatcaaagaacaa
gaagtttacatgggcgaaattccgctcatgactgataacggtaccttcgtgatcaacggt
actgagcgcgtaatcgtgtctcagttgcaccgtagtccaggtgtgttcttcgatagcgac
aaaggtaaaacccactcttcaggtaaggtgctgtataacgcacgtattattccttaccgt
ggttcctggctggatttcgaatttgatccgaaggataacctatttgtccgtatcgaccgt
cgccgcaaattgcctgcgactattatcctgcgcgcgctgggttactctaccgaacagatt
ctcgatcttttcttcgataaaattgtctatgaaatcaatggcaataaattgcagatggat
ctggttcctgagcgcctgcgtggtgaaactgcatcgtttgatatcgaagcgaacggtaaa
gtttatatcgaaaaaggtcgccgcatcactgcacgtcatatccgtcagctagagaaagac
gatattgagcgcattgaagtgcctgttgaatatattgctggcaaagtactgtccaaagat
tatatcgacgagagcactggtgaactgatcggcgcagccaacatggagctgtcgctggat
ctgctggctaaactgagccagtctggtcacaagcgtattgagaccctgttcaccaacgat
cttgatcacggtgcatacatgtctgaaaccgtgcgcgtcgatccgtcaagcgatcgtctg
agcgcgctggttgaaatctatcgcatgatgcgtcctggtgagccaccaacgcgtgaagca
gcagaaacgctgttcgagaacctgttcttctctgaagaccgctacgatctgtctgcggtt
ggccgtatgaagttcaaccgttctttgttgcgtgacgagatcgaaggttccggtatcctg
agcaaagatgacatcatcgaagtgatgaagaagctcattgatatccgtaacggcaaaggc
gaagtggatgatatcgaccacctcggcaaccgtcgtattcgttccgttggcgaaatggca
gaaaaccaattccgcgttggtctggtgcgtgtagaacgtgctgtaaaagagcgtctgtct
ctgggcgacctcgatacgctgatgccacaagacatgattaacgccaagccgatttcggct
gccgtgaaagagtttttcggttctagccaactgtcacagtttatggaccagaacaaccca
ctgtctgagattacgcacaaacgtcgtatctctgcattgggcccaggtggtctgacgcgc
gaacgtgctggctttgaagttcgtgacgtacacccgacgcactatggtcgtgtttgtcct
atcgaaacgccggaaggtccaaacatcggtctgatcaactccctgtccgtttatgcacaa
accaacgaatacggtttccttgaaaccccatatcgtcgcgtgcgtgaaaacgtggttacg
gatgagatccattacctgtctgcgattgaagaaggtaacttcgttatcgcccaggcaaac
accaatttggacgaagaaggccgcttcatcgacgaactggttacctgccgtaacaaaggt
gagtccagcttgttcagccgcgatcaggttgaatacatggacgtttccacacagcaggtg
gtttccgtcggtgcatccttgattccgttcctggaacacgatgacgccaaccgtgccctg
atgggtgcgaacatgcaacgtcaggctgttccaaccttgcgcgctgataagccgctggtt
ggtacgggtatggaacgtgctgttgcggttgactccggtgtaactgccgtagccaaacgt
ggtggtacagtacagtacgtggatgcatctcgtattgtaatccgtgttaatgacgatgaa
atgtatccgggcgaagccgggatcgacatctataacctgaccaaatatacccgttctaac
cagaacacctgcatcagccagatgccgtgtgtgtctttgggtgagccggtagaacgtggt
gacgttctggcagatggtccgtccaccgatctgggtgagttggcgctgggtcagaacatg
cgcgtggcattcatgccatggaatggttacaacttcgaagactccatcctcgtttccgag
cgtgtggttcaggaagatcgctttacgaccatccacattcaggaactggcctgtgtgtct
cgtgacaccaagttagggcctgaggaaattactgcggacatccctaacgtgggtgaagca
gcactttccaaactggatgagtctggcatcgtttatatcggtgcagaagtcaccggcggt
gacattctggttggtaaggtaacgccgaaaggtgaaacccaactgacaccagaggaaaaa
ctgctgcgtgcgatcttcggtgagaaagcgtctgacgttaaagactcttctctgcgtgta
ccaaacggtgtttccggtacgattatcgacgtacaggtctttacccgcgatggcgtggaa
aaagacaaacgtgcgttggaaatcgaagaaatgcaactgaagcaggcgaagaaagacctg
actgaagagttgcagattctggaagcgggtctgtttggacgtatccacgcagtgctggtt
tctggcggcgtagaagctgacaaactggacaaactgccgcgtgagcgctggttggaactg
ggtctgactgatgaagagaaacagaatcagttggaacagcttgcagaacagtatgatgag
ctgaagcacgagtttgagaaaaaactcgaagcgaagcgccgtaaaatcacccaaggcgat
gatctggcaccgggcgtgctgaaaatcgttaaggtttatctggctgttaagcgtcagatt
caaccgggtgacaagatggcaggtcgtcacgggaacaaaggtgttatctccaagatcaac
ccgatcgaagatatgccttacgatgagaacggtacgccggtcgatatcgtactgaacccg
ctgggcgtaccttcacgtatgaacattggtcagattctggaaacccacttgggtatggct
gcaaaaggtatcggcgagaaaatcaacgccatgctcaaacagcacgaagaagtgactaag
ctgcgtgaatttatccagagagcctacgatctgggcgacgatgtgcgtcaaaaagtcgac
ctgagtactttctccgacgaagaagttatgcgtctggctgaaaacctgaagaaaggtatg
ccaattgcaacgccggtattcgacggtgcaaaagagaaagaaatcaaggaactgttgcag
atgggcggtatccctacctccggtcagattactctgtacgatggacgtactggtgagcaa
tttgagcgtcaggttacagtgggctacatgtacatgctgaaactgaaccacttggttgac
gataagatgcatgcccgttccaccggttcttatagcctggttactcagcagccgctgggt
ggtaaggcgcagttcggtggtcaacgcttcggtgagatggaagtgtgggcgctggaagct
tatggtgcagcttataccctgcaagaaatgttgaccgttaagtctgatgacgtgaacggc
cgtaccaagatgtataagaacatcgtggatggcaatcatcagatggagccaggcatgccg
gaatccttcaacgtattgttgaaagaaatccgctcgctgggtatcaacatcgagctggaa
gaaaagtaa
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