Pectobacterium parmentieri SCC3193: W5S_0221
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Entry
W5S_0221 CDS
T02514
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pec
Pectobacterium parmentieri SCC3193
Pathway
pec03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pec00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
W5S_0221
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pec03021
]
W5S_0221
03400 DNA repair and recombination proteins [BR:
pec03400
]
W5S_0221
Enzymes [BR:
pec01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
W5S_0221
Transcription machinery [BR:
pec03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
W5S_0221
DNA repair and recombination proteins [BR:
pec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
W5S_0221
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AFI88352
UniProt:
A0A0H3I1A4
LinkDB
All DBs
Position
247523..251746
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEQECEQLREELTETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERVYRAG
LASLHARVKVRITEEIKSIEGDVTHQTSIIDTTIGRAILWMIVPKGLPYSIVNQPLGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPEKKAEIIEEAETE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSVEDVVNRDGVVEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRERVL
GRVTAEDVIKPGTADILVPRNTLLNEQWCDMLEENSVDAVKVRSVVSCETDFGVCANCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSLKL
SNAKFVMNSNGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGSEVSGGETVANW
DPHTMPVVTEVSGFIRFADMIDGQTITRQTDELTGLSSIVVLDSAERTGSGKDLRPALKI
VDGKGEDVLIPGTDMPAQYFLPGKTIVQLEDGVQIGAGDTLARLPQESSGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVISPLDGSDAYEEMIPKWRQLNVFE
GEVVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKGTIVSAGSTEFLEGEQAEVSRIKIANRQLEADGKITATYSRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRQAGEAPV
VPQVSADEASANLAELLNAGFGSSDDE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcgcaaactaaaaccgaagagtttgatgcgatc
aaaattgctctggcttcgccagacatgatccgttcgtggtcttttggtgaagttaaaaag
ccagaaaccatcaactaccgtacgttcaagcctgaacgtgacggccttttctgcgcccgt
atctttgggccagtaaaagattatgagtgcttgtgcggtaagtataagcgcctgaaacac
cgtggtgttatttgtgagaagtgcggcgttgaagtaacccaaactaaagtacgtcgtgag
cgtatgggtcacatcgagctggcttctccgactgcgcacatctggttcctgaagtcactg
ccttcccgtatcggtttgctgttagatatgccgctgcgtgatattgagcgtgtgctttat
tttgaatcttatgtcgttgttgaaggtggcatgaccaaccttgagcgccgtcagatcctg
actgaagagcagtatctggatgcgctggaagagttcggagatgaattcgacgcgaaaatg
ggtgccgaagcgatccaggctctgctgaagaacatggatctggagcaggaatgcgagcaa
ctgcgtgaagagctgaccgaaaccaactccgaaaccaaacgtaaaaagttgaccaaacgc
attaagctgctggaagcgttcgtacagtctggtaacaagccagagtggatgattctgacc
gttctgccggtactgccgccagatctgcgtccgttggttccgctggatggtggtcgtttt
gcgacttctgacctgaacgatctgtatcgtcgcgtgatcaaccgtaacaaccgtctgaaa
cgcctgctggatctggctgcgccagatatcatcgtacgtaacgaaaaacgtatgttgcag
gaagcggttgatgcgctgttggataacggccgtcgcggtcgtgcgatcaccggttctaac
aaacgccctctgaaatctttggccgatatgatcaaaggtaaacagggtcgtttccgtcag
aacctgctcggtaagcgtgttgactactccggtcgttccgtaatcaccgttggtccatac
ctgcgtctgcaccagtgtggtctgccgaagaaaatggcactggaactgttcaaaccgttc
atctacggcaagctggaactgcgtggtcttgctaccaccattaaagctgccaagaaaatg
gttgagcgtgaagaagccgtcgtatgggatatcctggacgaagttatccgcgaacaccca
gtactgctgaaccgtgcaccaacactgcaccgtttgggtatccaggcatttgaaccggta
ctgatcgaaggtaaagcgatccagttgcacccgctggtttgtgcggcatataacgccgac
ttcgatggtgaccagatggctgtacacgtaccgctgacgctggaagcccagttggaagcg
cgtgcgttgatgatgtcgaccaacaacatcttgtcccctgcgaatggtgagccaatcatc
gttccttctcaggacgtggtattgggtctgtattacatgacgcgtgactgtgttaacgcc
aaaggcgaaggcatggtgctcacggggcctaaagaagctgaacgcgtttatcgtgccggc
ctggcctctctgcatgcgcgcgttaaagtgcgtatcacggaagagatcaagagcatcgaa
ggcgatgttacgcatcagacgtcgattatcgatacgactatcggccgtgccatcctgtgg
atgatcgtaccgaaaggtctgccatactcgatcgttaaccagcctctgggcaagaaagcg
atctccaaaatgctgaacacctgttaccgcattttgggtctgaagccgacggttatcttt
gctgaccagactatgtacaccggttttgcttacgcggcgcgctctggtgcttccgtaggt
atcgatgacatggttatcccggagaaaaaagccgagattatcgaagaagcagaaaccgaa
gttgccgagattcaggagcagttccaatctggtctggttaccgcgggcgaacgctataac
aaagtgatcgatatctgggctgcggcgaacgagcgtgttgcgaaagcgatgatggaaaac
ctgtccgttgaggatgtggttaaccgtgatggcgtagttgagcagcaggtttctttcaac
agcatctttatgatggccgactccggtgcgcgtggttctgcggcacagattcgtcagttg
gcgggtatgcgtggtctgatggcgaaaccagatggttccatcatcgaaacgccgatcacc
gcaaacttccgtgaaggtttgaacgtactccagtacttcatctcaacgcacggtgcacgt
aaaggtctggcggataccgcactgaaaacggcaaactccggttacttgacgcgtcgtctg
gttgacgttgcgcaggatctggttgtgaccgaagacgattgtggtacccatgaaggtatc
atgatgacgccggttatcgagggtggtgatgttaaagagccactgcgtgagcgcgtactg
ggtcgtgtaacggctgaagacgtgatcaaaccgggcaccgcggatattctggttccacgt
aacacgctgctgaacgagcagtggtgtgacatgttggaagagaactccgttgacgccgtt
aaagtacgttcagtggtaagttgcgaaaccgactttggcgtgtgcgccaattgctacggt
cgcgatctggctcgtggtcatatcatcaacaaaggtgaggctatcggggttatcgcggca
cagtccatcggtgagccaggtacacagttaaccatgcgtacgttccacatcggtggtgcg
gcatcgcgtgcggctgctgagtccagcattcaggtgaaaaacaaaggtagcctgaaactg
agcaacgcgaagttcgtaatgaacagcaacggtaaattggttattacttcacgtaatact
gaactgaagctgatcgacgaattcggacgtactaaagaaagctataaagtgccttatggt
gcggtgatggcgaagggtgacggctcagaagttagcggtggcgaaaccgtcgcaaactgg
gatccgcataccatgccagtggtgaccgaagtgagcggtttcatccgctttgctgacatg
attgacggtcagaccattactcgccagaccgacgaactgactggtttgtcttctatcgtc
gttctggatagcgcagagcgtactggtagcggtaaagacttgcgtccagcactgaaaatc
gttgacggtaaaggtgaagatgtactgatcccaggtactgatatgccagctcaatacttc
ctgccaggtaaaacgattgttcagttggaagatggagtgcagattggtgccggtgataca
ttggcgcgtctccctcaggaatccagtggtaccaaggatattaccggtggtctgccacgc
gtagccgacctgtttgaagcacgccgtccgaaagagccggcaattctggcagagatcagc
ggcatcatttccttcggtaaagaaaccaaaggcaagcgccgtttggtaatttctccgttg
gatggtagtgatgcttacgaagagatgattccgaaatggcgtcagctcaacgtgttcgaa
ggtgaagttgttgagcgtggtgacgttgtttccgacggcccagagtctccgcacgatatc
ctgcgtctgcgtggcgtacatgcagtaacgcgttatatcaccaacgaagttcaggaagtt
taccgtctgcaaggcgttaagattaacgataaacacatcgaagttatcgttcgtcagatg
ttgcgtaaaggcaccatcgttagcgcgggtagcacggagttcctggaaggcgaacaggca
gaagtgtctcgcatcaagattgccaaccgtcagttggaagcggatggcaagatcacggca
acgtacagccgcgatctgctgggtatcaccaaagcatctctggcgaccgagtccttcatt
tctgcggcatcgttccaggaaaccactcgcgtacttaccgaagccgctgttgcgggtaaa
cgtgatgaactgcgtggcctgaaagagaacgttatcgtaggtcgtctgatcccagcaggt
acgggttatgcgtaccatcaggatcgtatgcgccgccgtcaggcaggcgaagcgcctgtc
gtgcctcaagtgagtgccgatgaagcttctgctaacttggccgaactgctgaatgcaggc
tttggtagcagcgacgacgagtaa
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