Pectobacterium parmentieri SCC3193: W5S_0717
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Entry
W5S_0717 CDS
T02514
Name
(GenBank) Cold-shock DEAD box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pec
Pectobacterium parmentieri SCC3193
Pathway
pec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
W5S_0717
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pec03019
]
W5S_0717
03009 Ribosome biogenesis [BR:
pec03009
]
W5S_0717
Enzymes [BR:
pec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
W5S_0717
Messenger RNA biogenesis [BR:
pec03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
W5S_0717
Ribosome biogenesis [BR:
pec03009
]
Prokaryotic type
rRNA helicases
W5S_0717
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_C
CMS1
Cas3-like_C_2
AAA_22
DRTGG
Motif
Other DBs
NCBI-ProteinID:
AFI88839
UniProt:
A0A0H3HZJ7
LinkDB
All DBs
Position
785701..787599
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AA seq
632 aa
AA seq
DB search
MTDLSTSFSDLGLSAPIINALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF
ALPLLNNLKPELKAPQMLVLAPTRELAVQVAEACNDFAKHMHGVNVVALYGGQRYDVQLR
ALRGGAQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAT
HQTALFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSYWTVQGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNV
ERTMKLTIPEVELPNAELLGQRRLAKFAAKVQQQLESSDLDMYRALLTKLQPQEELDIET
LAAALLKMAQGERPLILPPDPAFRPRREFRDRDESRSDSRGDRRRDPRDSRESRDGDRPQ
RRERRESGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGSHSTIELPKG
MPGDLLSHFTRTRILNKPMNMQLLGDAVAQPERRGGNRPAGAGGERRDGAAPRRSFGGGE
RRESNGNGGERRERSFNRDAAPRAPRRRPADA
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgactgatttatctacttctttttccgatttagggctgtctgctcctattattaatgcc
ctgaccgatctgggttatgaaaaaccatcgccgattcaggctgaatgtattcctcacctg
ctgaacggtcgcgatgtgctgggtatggcacagaccggcagcggtaaaactgcggctttt
gctctgccattactcaataatttaaagcctgagttaaaagcaccgcagatgctggtgttg
gctccaacccgtgaactggctgttcaggttgctgaagcctgtaatgattttgccaaacat
atgcacggcgttaatgttgttgccctgtacggcggccagcgttatgacgttcaactgcgc
gctttgcgtggtggggcacagatcgttgttggtactcctggccgtctgctggaccacctg
aaacgcggtacgctggatctgtccaacctgagtggtttggtactggacgaagcagatgaa
atgctgcgtatgggcttcatcgaagatgttgaaaacatcatggctcagatcccggctacg
catcagactgcgctgttctctgcaaccatgccggaagcgattcgccgtattacgcgccgt
ttcatgaaagatccgcaggaagttcgcatccaatcaagcgtgactacgcgtccagacatc
agccagagctactggacggtgcagggtatgcgtaaaaatgaagcattggtacgtttcctg
gaagcagaagattttgatgcggcgattattttcgttcgtaccaagaacgcaacgctggaa
gtggcagaagcgctggaacgcagcggttacaacagtgccgcgctgaatggtgacatgaac
caggcgctgcgtgagcaaacgctggagcgtctgaaagatggtcgtctggatatcctgatt
gcgaccgatgttgcagcacgtggtctggacgttgagcgtatcagtctggtagtgaactac
gatattccgatggatgccgagtcttacgtccaccgtattggtcgtactggtcgtgcaggt
cgtgcaggtcgtgcactgctgtttgtagaaaaccgcgagcgtcgcctgttgcgcaacgtt
gaacgtacaatgaagctgacaattcctgaagtggaattgccaaatgcggaattactggga
caacgtcgcttggctaagtttgccgctaaagtacagcagcaactggaaagcagcgatctg
gacatgtaccgcgcgctgttgacgaaactgcaaccgcaggaagagctggatatcgaaacg
ctggctgccgcgctgttgaaaatggcacagggagaacgtcctctgattctgccgccagat
ccagcattccgtcctcgccgcgaattccgcgatcgtgatgagtctcgtagtgattcacgt
ggcgatcgtcgccgcgatccgcgtgattctcgcgaaagccgtgacggtgaccgtccacag
cgtcgtgaacgtcgtgagtcgggtgagatggaactgtatcgtatcgaagtgggtcgtgat
gacggtgttgaagttcgccacattgttggtgctatcgccaacgaaggggatatcagcagc
cgctacatcggtaacatcaagctgttcggttcccactccacgatcgagctgccaaaaggt
atgccgggcgacctgttatcacactttacccgcacgcgtattctgaacaaaccaatgaat
atgcaattgctgggtgatgcagtagcacagccggaacgtcgtggcggtaaccgtcctgct
ggtgcgggtggcgaacgtcgtgatggcgcagcgccacgtcgctctttcggcggtggtgaa
cgccgtgaaagtaacggtaatggcggtgagcgtcgcgaacgttctttcaatcgtgatgca
gccccacgtgctccacgtcgtcgtcccgctgacgcgtaa
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