Pectobacterium parmentieri SCC3193: W5S_0755
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Entry
W5S_0755 CDS
T02514
Name
(GenBank) HTH-type transcriptional regulator RafR
KO
K02529
LacI family transcriptional regulator, galactose operon repressor
Organism
pec
Pectobacterium parmentieri SCC3193
Brite
KEGG Orthology (KO) [BR:
pec00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pec03000
]
W5S_0755
Transcription factors [BR:
pec03000
]
Prokaryotic type
Helix-turn-helix
LacI family
W5S_0755
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peripla_BP_1
Peripla_BP_3
LacI
Peripla_BP_4
HTH_3
I-HmuI_NUMOD-like
AllH
HTH_36
Motif
Other DBs
NCBI-ProteinID:
AFI88874
UniProt:
A0A0H3HZL4
LinkDB
All DBs
Position
complement(825000..826004)
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AA seq
334 aa
AA seq
DB search
MSLKTIANNLGLSVAAVSRALNGHRDISEATRQRIQEEAERIGYRPNTHARRLKMGKSDA
VGLVYPYASSLSNDIFFEMIGAISRKLAQHDVDFLLLADEQDECQNGVRLITSRRIDALI
VAHTCEQDARLTLLQRNKVPFLALGRSQLSHPYAWFDFDNRAGMALATEHLIELGHRRIA
MLSEDHSQAFIMQRRQGYRDALQRHNLPFHDAYLRCVSPTRRAGYQAMLDLLALPEPPTA
IVMDGNVHGDGAVAALQQAGRLSGSHPMALVMYDGLPQDSLTDISVTAIEQATREQVGEQ
IASMTQALIAGEAVENLQVLWQPTLRLGKTSFPA
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
gtgtctttaaaaacaatcgcaaataacctgggtttgtcggtggcggcagtgagtcgtgct
cttaacggccatcgggatatctccgaagccacgcgccagcgtatccaggaagaggctgag
cgcatcggctatcgccctaatacgcacgcgcgccgcctgaaaatgggcaaaagcgacgca
gtcgggctggtctatccctatgcatcttctctgagcaacgatatcttttttgagatgatt
ggcgcgatcagtcgcaaactggcacagcacgacgtcgattttctcctgctggcagatgaa
caagacgaatgtcagaacggtgttcggttgatcaccagtcgccgtatcgacgcgctgatc
gtggcacacacctgtgagcaggatgctcgactgacgctactgcaacgtaacaaagtgcct
tttctcgcgctggggcgtagccagttatcgcacccttacgcgtggttcgattttgacaac
cgcgcaggtatggcgctagcgaccgaacacctgatcgaactcggccatcgccgtatcgcc
atgctaagcgaagaccactcacaagcgttcatcatgcagcgtcgtcagggttatcgtgat
gccctgcaacgtcacaacctgccgtttcacgatgcctacctgcgctgcgtcagccccacg
cgccgtgcaggctatcaggccatgcttgacctcctggcactgcctgagccgccaaccgca
atagtgatggatggcaacgtccacggcgatggcgctgtcgccgcattgcagcaagcaggc
cgcctttccggttcacaccctatggcgttagtgatgtatgacggtttgccacaggacagc
ctgacagacattagcgtgacggcgatagagcaggcgacgcgggaacaggttggtgaacag
attgccagcatgacgcaggcgctcatcgcgggcgaagccgtagaaaatttgcaggtgtta
tggcagccgacgcttcgcctcggtaaaacgagctttcccgcctaa
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