Pectobacterium parmentieri SCC3193: W5S_0972
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Entry
W5S_0972 CDS
T02514
Name
(GenBank) Sensory box sigma-54 dependent DNA-binding response regulator
KO
K11908
sigma-54 dependent transcriptional regulator
Organism
pec
Pectobacterium parmentieri SCC3193
Brite
KEGG Orthology (KO) [BR:
pec00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pec03000
]
W5S_0972
Transcription factors [BR:
pec03000
]
Prokaryotic type
Helix-turn-helix
Other families
W5S_0972
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Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
AAA_lid_14
AAA_5
Mg_chelatase
AAA_16
AAA_2
HTH_8
AAA_3
LUZP2
TIP49
nSTAND3
Torsin
AAA_7
MIPOL1_N
Motif
Other DBs
NCBI-ProteinID:
AFI89090
UniProt:
A0A0H3I598
LinkDB
All DBs
Position
1076429..1077967
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AA seq
512 aa
AA seq
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MQHALKLALALTQQHDEASLCGWLLEAMQAAWQPQGMLLGMVDVSGRQLICQGRVHETPV
ALSLGVDDFSHPLAYALHKNQARTWDSLYGGARIEHREFQQMLISVGASCGLHALPLLSD
GGKPLAVLALLDTPARLQTLHQQGECEQLTQVFCRQLMLLRELAHTRREQVALRDSLRQI
KDEGQSRREQEKRVETTLVGQSAVMKALHQQIYQAAKHRLSVLIQGETGSGKEVVARLLH
QCSERADKPFIAINCAAIPENLIESELFGYQKGAFSGAQSNKVGLVEQANGGTLFLDEVG
DMPQAMQAKLLRVLETHSFRSLGADKEVHSDFRLIAATHQPLEQQVSDGVFRQDLYHRLC
QCLLQLAPLRERPDDIRLLCEHFIDQFADERQKHVGPLSRTFLRQLMGYDFPGNVRELRN
LLEVVCANTPDGDVLSLTSLSPELRERLMSSSVEEQDCYQHIHDLRIATQRYEAAVIEAR
LRQFQGNRLLVADSLNIPKRTLDHKCQKLEVN
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgcaacatgccctcaaactggcgcttgcgctcacccaacagcatgatgaagccagtctg
tgcggctggctgctggaggcgatgcaggccgcctggcaaccgcaagggatgctactgggt
atggtggatgtcagcggcaggcaactgatctgccaggggcgggtgcatgaaacgccagtg
gcgctgagtctgggggtggatgactttagccaccctctggcttacgcgctgcataaaaat
caggcgcgcacctgggattcactctatggcggtgcccgcattgagcaccgtgagtttcag
cagatgctgatctctgtcggggcgagttgcgggcttcacgcgctgccgctgctgtcggat
ggcggtaagccgctggcagtgctggcgctgttggatacgccggcgcgcctgcaaacgctg
catcagcagggagaatgcgaacaactgacgcaggtgttttgtcgtcaactgatgctgctg
cgtgagctggcgcatacccggcgggaacaggtcgcgctgagagattcgctccgccagatt
aaggatgaagggcagagccgtcgcgagcaggaaaaacgggtggaaaccacgttggtgggg
cagtctgccgtgatgaaagcgctacatcagcagatttatcaggcggcaaaacaccgtctt
tcggtgctgattcagggcgaaaccggttcagggaaagaagtggtggcgcgactgctgcat
cagtgttctgaacgtgccgacaagccctttattgccatcaactgtgccgcaatccctgaa
aatctgattgagagcgagctgtttggctatcaaaaaggggcgttctccggcgcgcaaagc
aacaaagtaggtctggtagaacaggctaatggtggaaccctgtttttggatgaggtcggc
gatatgccgcaggccatgcaggccaagctgttaagggtattggagacgcatagcttccgt
tccctcggtgcggataaagaggttcattctgacttccgtttgatcgccgcgacgcatcag
ccgctggaacaacaggtgtctgacggggtgtttcggcaggatctctaccatcgcctctgc
cagtgtctattgcagctcgcgccgctgcgtgagcggccggacgatattcgcctgctgtgc
gaacactttatcgatcaatttgcggacgaacgacaaaagcacgttgggccgttaagccgt
actttccttcgccaattaatgggatatgactttcccggcaatgtacgggaactgcgcaac
ctgctggaggtcgtctgcgcgaatacgccggacggcgatgtgctgtctctgacatcgttg
tcccccgaactacgtgagcggctgatgagcagttcggtggaggaacaggattgctatcag
cacattcacgatttacgtatcgccacacaacggtatgaagcggctgtgattgaagcacgt
ctgcgccagtttcagggcaaccgcctgctggtggccgatagcctcaatatccctaaacgt
actcttgaccacaaatgccagaagctggaggtaaattga
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