Pectobacterium parmentieri SCC3193: W5S_1105
Help
Entry
W5S_1105 CDS
T02514
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
pec
Pectobacterium parmentieri SCC3193
Brite
KEGG Orthology (KO) [BR:
pec00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pec03009
]
W5S_1105
Enzymes [BR:
pec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
W5S_1105
Ribosome biogenesis [BR:
pec03009
]
Prokaryotic type
rRNA helicases
W5S_1105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_11
AAA_22
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AFI89206
UniProt:
A0A0H3I5J0
LinkDB
All DBs
Position
complement(1201270..1202595)
Genome browser
AA seq
441 aa
AA seq
DB search
MTVTNFSELDLDESLLDALRDMGYERPTAIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLL
PVLQHLIDFPRKKSGPPRILILTPTRELAMQVADQARAFAAHTHLDIATITGGVAYMNHA
EVFSENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW
RKQTMLFSATLEGDAIKDFAERLLNEPIEIESDPSRRERKKILQWYYRADDLKHKTALLC
HQLKQPDVTRSIIFVRKRERVHELVSWLHEAGINSCYLEGEMVQAKRNEAIKRMSDGRVN
VLVATDIAARGIDIDDVSHVFNFDLPRTADTYLHRIGRTGRAGRKGCAISFVEAHDHLLL
GKISRYLNEPLKPRVVEELRPETKAPSAKTTGKPSKKVLAKRKEKKEKEKEKVKVKVRDR
DSKNVGKRRQPTKKTDEPSAE
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgactgtaaccaatttttccgagctcgatcttgatgaaagcctgttagacgccctgcgc
gatatgggttatgaacgtccgactgcgattcaagccgaggcaatccctccggcgatggaa
ggccgtgacgtactgggctctgcgccaacaggtacaggtaaaaccgccgcctatctgctg
ccggttttgcagcatcttatcgattttcctcgtaaaaaatcaggtccacctcgtattctg
atcctcacgccaactcgtgagctcgctatgcaggttgccgatcaggcgcgtgcatttgcg
gcgcatacgcatctggatatcgccacgatcactggtggcgtggcctatatgaaccacgca
gaagtgttcagcgaaaatcaggacgttgtcgtcgcgacgactggccgtctgctgcaatac
atcaaagaagaaaacttcgattgccgtgcggtagaaacactgatcctggacgaagcggac
agaatgctggatatgggcttcgcccaggatattgaacacatcgcaggggaaactcgctgg
cgcaagcaaacgatgctgttttctgcgacgttggaaggggacgcgatcaaggatttcgcc
gagcgtctgctcaacgaaccgattgaaatcgaatccgacccatcgcgtcgggagcgtaaa
aaaattctgcaatggtattaccgcgccgacgatctcaaacacaaaacagccctgctctgc
catcagttaaaacagccagatgttacgcgctctatcatctttgtacgcaagcgtgagcga
gtgcatgaactggtatcctggctgcatgaagctggcattaactcatgctatctcgaaggc
gaaatggtgcaagccaagcgcaacgaggcgatcaaacgcatgagcgacggccgagttaac
gtgctggtagcaacagatatcgcagcgcgtggcatcgatattgacgatgtcagccacgta
tttaacttcgacttgccgcgcacagccgatacttaccttcatcgtatcggccgcaccggc
cgcgcgggtcgcaaaggctgtgctatctctttcgttgaagcgcacgatcacctgctgctg
ggaaaaatcagccgctacctgaatgagccgctaaaaccgcgcgttgtagaggaactccgt
ccagagaccaaagcgccaagcgccaaaacgacgggcaaaccgtcgaaaaaagtgctcgct
aagcggaaagagaaaaaagagaaggaaaaagaaaaagttaaagtgaaggttcgcgatcgc
gacagtaaaaatgttggtaagcgtcgtcaaccaacaaagaaaactgacgaaccgtctgct
gaataa
DBGET
integrated database retrieval system
