Pectobacterium parmentieri SCC3193: W5S_1999
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Entry
W5S_1999 CDS
T02514
Name
(GenBank) YcbB
KO
K21470
L,D-transpeptidase YcbB
Organism
pec
Pectobacterium parmentieri SCC3193
Brite
KEGG Orthology (KO) [BR:
pec00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pec01002
]
W5S_1999
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
pec01011
]
W5S_1999
Peptidases and inhibitors [BR:
pec01002
]
Cysteine peptidases
Family C82
W5S_1999
Peptidoglycan biosynthesis and degradation proteins [BR:
pec01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
W5S_1999
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Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
Scaffold
PG_binding_1
Motif
Other DBs
NCBI-ProteinID:
AFI90089
UniProt:
A0A0H3I421
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All DBs
Position
2175980..2177746
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AA seq
588 aa
AA seq
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MKAQWLMSTGDKWMLLLHKRKMVRLLLRVGCLWVGSLSPSFSVLAAAPTVVPAGVVSVEN
SRVGLLSALPHGMTVHYLADLSSLYAQHQMQPMWADNRAVQQFQQQLAELAIAGVQPQFT
TWVSWLTDPQLTGFARDIVLSDAMLGYLQFVSGVERNGNNWLYSSVPYRLQSPAVNIVSQ
WQQAVNSGTSAAYVASLTPSHSQYAKMHEALKTMLTDNRPWPSLNLAESLRPEQQSRELV
ALREILQRTGMLSLTESITLFNENVAATTTPLTEQTPVDNGVANADDRYSGELVEAVKRF
QHWQGLEGDGVIGKRTRDWLNVSPQMRATLLALNIQRLRLVPDNVHTGIMVNIPNYSLIY
YQDGAERLSSRVIVGQPKRKTPLMSSSLYNVVVNPPWNVPTTLTRQDIIPKVVRDPGYLQ
RHGYTVLSGWSQDAEAIDPSMIEWQGVSAERFPYRLRQAPGANNSLGRYKFNMPNSEAIY
LHDTPNHNLFQRDIRALSSGCVRVNKASELASMLLQDAGWNNSRISSTLDQGNTTFVSMK
HRIPVNLYYLTAWVAEDGRPQFRTDIYNYDDTARAGTKVLPKAGLLLQ
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagcacagtggctaatgagtacaggggataaatggatgttgttgttacataagcga
aaaatggtcagattgttgttgcgcgtgggttgcctttgggttggaagcctgtccccttcg
ttttcggtgctggcagcagcgcctacggtggtacccgcaggtgtcgtttctgtagaaaat
agccgtgtagggcttttgtctgcgctaccgcacggtatgacagtacattatctagcggat
ttatcctcgctttatgctcaacaccagatgcaaccgatgtgggcagataatcgcgcggtt
caacagtttcagcagcaacttgccgaattggcaatagcgggcgtacaaccgcaattcact
acgtgggtaagttggctgaccgatcctcaattaaccggatttgcgcgtgatattgtgtta
tcagacgcaatgttgggttatttgcagttcgtctctggtgtagaacgcaacggtaacaac
tggttgtatagcagcgtgccttatcgcctgcaatcgcccgcagtcaatatcgtttcccaa
tggcaacaggccgtaaattccggcaccagcgcagcctatgttgcctcgctgacgccttcg
cattcgcaatacgccaaaatgcatgaagcattgaagacgatgctgacggacaatcgcccg
tggccgagcctgaatttggccgaatctctacgcccggaacaacagagccgcgagctggtg
gcgttgcgtgaaattctgcaacgtactggcatgttgtcgttgacggaaagcatcacgctt
tttaatgaaaatgtcgcagcaaccaccacgccgctaactgagcaaacgcctgtcgacaat
ggtgtggctaatgcagacgatcgctactcgggcgagttggttgaggcggttaaacgcttc
cagcattggcaggggctggagggtgatggcgtgattggtaagcgcacgcgcgattggctc
aatgtttctccgcaaatgcgtgcgacgctgctggcattgaatatccagcgtttgcgcctg
gtaccggataatgttcataccggtattatggtgaatatccccaattactcactgatctat
tatcaggatggcgctgagcgtttatcgtcgcgcgtcattgtcgggcaaccgaaacgcaag
acaccgctaatgagcagttcactgtataacgtcgtggtcaatccgccgtggaatgtcccc
actacgctgactcggcaggatatcattcctaaagtcgtgcgcgatcctggctatctgcag
cgtcatggctatacggtgttgtctggctggagtcaggatgcagaggcgattgacccttca
atgatcgagtggcaaggggtgtctgcagagcgcttcccttatcgtctgcgtcaggcccct
ggcgcaaataattcattggggcgctataaatttaatatgcctaattcggaagcaatttat
ctgcatgacacgccgaatcataatctgtttcagcgagatatccgggcgctgagttccggt
tgtgtgcgggtcaataaggcatcggaactggctagcatgctgctacaggatgcaggctgg
aataatagccgtatttcctccacgttggatcagggaaataccacctttgtttcaatgaaa
catcgcataccggttaatctctattacctgaccgcgtgggtggctgaagatggcaggccg
caattccgaacagatatttacaattatgatgataccgcccgagcagggacgaaagtactt
cccaaagcagggctgttgcttcagtaa
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