Pectobacterium parmentieri SCC3193: W5S_2354
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Entry
W5S_2354 CDS
T02514
Name
(GenBank) HTH-type transcriptional regulator ybjK
KO
K23778
TetR/AcrR family transcriptional regulator, regulator of biofilm formation and stress response
Organism
pec
Pectobacterium parmentieri SCC3193
Brite
KEGG Orthology (KO) [BR:
pec00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pec03000
]
W5S_2354
Transcription factors [BR:
pec03000
]
Prokaryotic type
Helix-turn-helix
TetR/AcrR family
W5S_2354
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TetR_N
TetR_C_6
HTH_24
TetR_C_31
DAGK_prokar
COQ9_N
HTH_AsnC-type
ATG27
Motif
Other DBs
NCBI-ProteinID:
AFI90442
UniProt:
A0A0H3I333
LinkDB
All DBs
Position
complement(2533093..2533644)
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AA seq
183 aa
AA seq
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MSPSHDATNDGKDTQSRILEAALEVILDHGVRGATYRKIAQQAGLSPGTLTYRYSSIELL
LNSAFVYMIDGISHAFRVRLKQAKDINSAREAVVDLICGDIWATPRHLTLSFELYALASR
KEEYRLILQEWMTRSRKSLHLHFSIATACSLDAMIEGYTIHNYLNNEAVSREDILNTVIK
LTS
NT seq
552 nt
NT seq
+upstream
nt +downstream
nt
atgtcaccatcacacgatgcaacgaatgatggcaaagatacgcaaagcagaattcttgag
gccgcgctggaagtcatactggatcatggtgtgcgaggggcaacttaccgcaaaattgcg
cagcaggccgggttgtcgccagggacgctgacctaccgctatagcagtattgaattgctg
ttaaacagcgcattcgtctatatgatcgacggtatctcacacgcattccgcgttcgcctc
aaacaggcaaaggacatcaacagcgcgcgtgaagcggtggtggacctgatctgtggcgat
atctgggcaacgccgcgtcacctgacattaagctttgaactgtacgcgctggcatcgaga
aaagaggagtatcggctgatattgcaggagtggatgacgcgcagcagaaaatcacttcac
ctccatttcagtattgcgaccgcgtgttcactggatgcaatgattgaaggatatacgatc
cataactatctcaataatgaagcagttagtcgtgaagacattctcaatacggtgatcaag
ttgacgtcttga
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