Pectobacterium parmentieri SCC3193: W5S_2602
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Entry
W5S_2602 CDS
T02514
Name
(GenBank) Exoribonuclease 2
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
pec
Pectobacterium parmentieri SCC3193
Brite
KEGG Orthology (KO) [BR:
pec00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pec03016
]
W5S_2602
Enzymes [BR:
pec01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
W5S_2602
Transfer RNA biogenesis [BR:
pec03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
W5S_2602
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Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
AFI90690
UniProt:
A0A0H3I636
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All DBs
Position
2814363..2816297
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AA seq
644 aa
AA seq
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MFQDNPLLAQLKQQLHSQTPRVEGVVKGTDKGYGFLEADGQKSYFIPPPHMKKVMHGDRI
TATLHTEKDREIVEPETLIEPFLTRFVGRIHKKDDRLSITPDHPLLKEAIPCRAARDVTH
DFQEGDWAVAEMRRHPLKGDRGFHAELTQYITTGDDPLVPWWVTLSRHNLERSAPEIEAT
ERHDGELVREDLTALNFVTIDSASTEDMDDALYVQDNGDGSLQLTIAIADPTAYVDVGSE
LDNIARQRAFTNYLPGFNIPMLPRALSDDICSLHPNERRPVLACRVTIAADGSLGNDIHF
FAASIESKAKLAYDNVSDWLENQGEWQPQNEAIAEQIRLLHRLCLARSEWRTTHALVFKD
RPDYRFLLGEKGDVLDIVVEHRRIANRIVEESMIAANVCAAIVLRDKLGFGIYNVHNGFD
PASVEQAVAVLDTHGVQADAQTLLTLEGFCTLRRELDAQPTQFLDSRIRRFQSFAEVSTT
PGPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAVITGQAAEKPQDDVTVQLAERRRLNRM
AERDVGDWLYARYLKDKAGTDTRFNAEIIDVTRGGLRVRLLDNGAVAFIPSSFIHAVRDE
LVCSQDMGTLSVKGDVVYRQGETLDVLIAEVRLETRSIVAKPAA
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagacaatccgctgcttgcacagctaaaacagcaacttcactctcagacaccg
cgtgttgaaggtgtcgtcaaaggaaccgataagggatatggctttcttgaagctgacgga
caaaaaagctacttcattccccctccacacatgaaaaaagtgatgcacggtgaccggatt
accgccaccctgcatacggaaaaagatcgggaaattgtcgaaccagaaacgctgatagaa
ccgttccttacccgttttgttggacgcatccacaaaaaggacgatcgactatccattacg
cctgaccacccgttgctgaaagaagcgattccttgccgcgccgcgcgcgatgtgacgcac
gattttcaggaaggcgactgggcagtagccgaaatgcgccgccacccattgaaaggtgac
cgtggtttccatgccgaactgacgcagtacatcaccacgggcgacgacccgctggtgccg
tggtgggtgacattgtcacgccataatctggagcgttctgccccagaaatcgaagcgact
gaacgccatgacggcgaactggtccgtgaagatctaacggcactgaactttgtcaccatc
gacagcgccagcaccgaagatatggacgatgcactctatgtgcaggacaacggtgatggt
tcactgcaattaactatcgctatcgccgatccaaccgcctatgtagatgtaggcagcgag
ttggacaacattgcacgtcagcgtgcctttaccaactatttgcccggcttcaacatcccg
atgctgccacgcgcgctgtcggacgatatctgttccctacacccgaacgagcgtcgccct
gtcctcgcctgccgcgtgacgattgccgccgatggttcactgggtaacgatatccacttc
tttgccgcctcgatcgaatccaaagccaaattagcgtatgacaacgtctctgactggctg
gagaatcaaggcgaatggcagccacaaaacgaggctatcgcggaacaaatccgtttgttg
caccgtctctgtctggctcgcagtgaatggcgcaccacgcatgctctggtgtttaaagat
cgcccggattaccgcttcctgctgggtgaaaaaggcgacgtgttggatatcgtggttgaa
caccgccgcatcgccaaccgtattgttgaagaatccatgattgccgccaacgtctgtgcg
gcgattgtgctgcgcgataagctgggtttcggcatctataacgtgcacaacggtttcgat
cctgcttcggttgaacaagcggttgctgtactggatacacatggcgttcaggccgatgcg
cagacgcttctgacactggaagggttctgtacgctgcgccgcgagctggatgcccagccg
acgcagttcctcgatagccgtattcgtcgcttccagtctttcgcggaagtgagcaccacg
ccggggccgcactttggtctggggctggaagcctatgccacctggacatccccgatccgt
aaatacggcgatatggtgaaccaccgtttgctgaaagcggtgattaccgggcaggctgcg
gaaaaaccgcaggatgacgtcacggtacaactggccgaacgccgtcgccttaaccgtatg
gctgagcgcgatgtcggcgactggctgtacgcacgctacctcaaagataaagctggcacg
gatactcgcttcaacgcggaaatcattgatgtcacacgaggcggcctgcgcgttcgcctg
ttggataacggcgcagtggcgtttatcccatcctcctttatccatgccgtgcgtgatgag
ttagtgtgtagtcaggatatgggcaccctctcggtgaaaggcgacgtggtttatcgtcag
ggagagacgctggacgttctcatcgctgaagtacgtctggaaacccgcagcatcgtggca
aaacctgccgcataa
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