Pectobacterium parmentieri SCC3193: W5S_2921
Help
Entry
W5S_2921 CDS
T02514
Name
(GenBank) Putative ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pec
Pectobacterium parmentieri SCC3193
Pathway
pec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
W5S_2921
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pec03019
]
W5S_2921
Enzymes [BR:
pec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
W5S_2921
Messenger RNA biogenesis [BR:
pec03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
W5S_2921
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
P-loop_SecA
UvrD-helicase
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AFI91004
UniProt:
A0A0H3I815
LinkDB
All DBs
Position
complement(3142192..3143622)
Genome browser
AA seq
476 aa
AA seq
DB search
MSFDSLGLSADILRAIEEQGYRDPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL
QLLTSREAQHKGKGRRPVRALILTPTRELAAQIDENVKAYSKYLPLRSLVVFGGVSINPQ
MMKLRGGVDILVATPGRLLDLEHQRAVDLSQIEILVLDEADRMLDMGFIHDIRRVLAKLP
AKRQNLLFSATFSDEIKALANKLLTNPASVEVVRRNTPSELVTQHVHFVDKRRKRELLSQ
LIGENNWQQVLVFTRTKHGANHLAELLEKDGITAAAIHGNKSQGARTRALANFKDGSIRV
LVATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAEATGEALSLVCVDEHKLLR
DIERLLKREIPRIAVEGYEPDPSIKAEPIVNGRQGNRGGGGARNAAPRAQSGAPRGQSER
GERSQGQGERRSAEGNRQPRKAGGNSDSPWGTGGKGNSEGQRRAPRPQNRSKPVNK
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgattctctcggcctgagtgccgatattctgcgtgcgattgaagagcagggt
tatcgcgatcctacacctgttcagcgtcaggcgatccctgtcgtgctggaagggcgcgat
ttaatggccagcgcccaaactgggacgggcaaaacggcaggttttacgctgccactattg
caactgttgaccagtcgtgaagcgcagcataaagggaaaggtcgtcgtccagtacgcgcg
ctgatcctgacgccaacccgcgaattggcagcgcagattgatgagaacgtgaaggcgtat
agtaaatatttacccctgcgttcactggtcgtattcggcggcgtgagtattaacccgcag
atgatgaaactgcgcggcggtgtggatattctggtggcgacgcctgggcgtctgctcgat
ctggaacatcagcgcgcagttgacctgtcacagatcgaaattttggtgctggatgaagcg
gaccgtatgctggatatgggcttcattcacgatattcgtcgtgtactggcgaagctgcca
gctaaacgccaaaacctgctgttctccgcgaccttctcggatgagatcaaagcgctggcg
aacaaattgctgactaatccagcctcggttgaagtcgtgcgtcgtaatacaccgtctgaa
ctggttacgcagcacgtacattttgtcgataagcgccgcaagcgtgaactgctatctcag
ttgattggtgaaaataactggcagcaggtgctggtctttacccgtaccaagcacggggct
aaccacctggctgaactgctggaaaaagacggtatcaccgctgcggctatccacggcaat
aaaagccagggcgcgcgtactcgtgcgttggcaaacttcaaagacggcagcattcgggtg
ctggtcgcgacggatattgctgcgcgtggtctggatatcgaccaactgccgcacgtggtg
aactatgaactgccaaacgtgccggaagattacgttcaccgtattggtcgtaccggtcgt
gcggaagcaacgggcgaagcgctgtctttggtgtgtgtcgatgaacacaaactgctgcgt
gacatcgaacgtctgctgaaacgtgagattccgcgtattgctgtcgaaggctacgagccg
gatccgtccatcaaggcagaaccgattgtgaatggccgtcaaggtaaccgtggcggtggc
ggtgcgcgtaacgcggcacctcgtgcgcagtctggcgcgccgcgcggtcagtccgagcgt
ggcgaacgtagccaaggtcagggcgaacgccgttcagccgagggtaatcgccagccgcgt
aaagcgggcggtaatagcgatagcccgtggggtactggcggaaaaggcaatagcgaaggc
cagcgccgcgcgccgcgtccgcaaaaccgcagcaagccagtgaacaaataa
DBGET
integrated database retrieval system
