Pectobacterium parmentieri SCC3193: W5S_3300
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Entry
W5S_3300 CDS
T02514
Name
(GenBank) Periplasmic binding transport protein
KO
K03546
DNA repair protein SbcC/Rad50
Organism
pec
Pectobacterium parmentieri SCC3193
Brite
KEGG Orthology (KO) [BR:
pec00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pec03400
]
W5S_3300
DNA repair and recombination proteins [BR:
pec03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
W5S_3300
Archaeal homologous recombinant proteins
W5S_3300
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SbcC_Walker_B
AAA_29
ABC_tran
AAA_21
SMC_N
nSTAND3
cobW
NTPase_1
KYNU_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AFI91374
UniProt:
A0A0H3I5X9
LinkDB
All DBs
Position
3553725..3557408
Genome browser
AA seq
1227 aa
AA seq
DB search
MKILSLRLKNLNALKGEWKIDFTKEPFSSNGLFAITGPTGAGKTTLLDAICLALYHETPR
LGLLSASQNDLMTRDTAECLAEVEFEVKGVGYRAFWSQRRARNVPDGNLQSPKAELALIE
GGKILCEKLNDKKEMITQLTGLDFGRFTRSMMLSQGQFAAFLNAKADDRAELLEELTGTD
IYGLISEHVYDKHKQANIALSTLQARASGIQLLTDEQRQQVEVQLAELTQQEQQGNIERE
QALTTLRWFEQLTWQQTQLTNTQLQHASAESAIQQAKPQLDRLANGEPAEKLRPLHQERE
RYRQESLALTQQIEQLSGKQASGHTALATLRQQEEKAEQGVIQHKQVLQQQELLINEQVV
PLDHRIATLQQQKNQQQDELAKTQLRLQADENKQTQIAAEQQQAKQLLEQIQAYRQQHAH
HQQWGEQLPLWRTQFLQLRQLQDEQQKLSQKQTQHTEQAAALQQEAATLTAQQREQQTVV
DAARQQFIQHDEMRKNQEAHQPLAALRQRFNQLIDQQATRRQLATASDQFQRLHTRKQQH
LARQDEIQGHISQSEILRKQQQSDHEQRSQHLADLEMLYRQEERIVKLEAERQRLQAGEA
CPLCGSTEHPAIERYQALQPSETQKRLTARQQDVKQLTMALANTTAQLASLGQQREQLQQ
EIAQLDSEHQTLLQQWQDVSERLQVNYTLEQQTEIAAWLTQRETEEQDIRQHITAHEQLQ
KQWQESKDSLTVAEALQRELDQKTVLNTQQRTSLNDTQADTLQSQQNTQQRLAQHTQEIT
QTLANTNLPLPEATAQDDWLAQRDSEWQIWKTKEQDQSRLIPRLATLESDLQYLSHSVTE
TTQQLQAQQQQLEQRTALLNTNQQERVTLFGDRQIAAVREQLQRTSQQYDNALRLAQLAR
QQAETTLSRLTGELTRTQQQYEQSMHQRDSATERFTQALQQSAFADETTFLNALLAEQER
QTLQVWKEKLYQSLQQAAALHQQAERELLAHQQKRPTSLLEDATQEAVQQQLATLDETLH
FTVRQQGEIQRQLNDDRQQRQNQQDLLNEIAQSQQKYDDWSCLNTLIGSQSGHKFRKFAQ
GLTLDHLVYLANLQLSRLHGRYMLKRKPGDDLELLVVDTWQADAERDTRTLSGGESFLVS
LSLALALSDLVSHKASIDSLFLDEGFGTLDAETLDIALDALDNLNASGKTIGVISHVDAM
KERIPVQIKVQKVNGLGVSKLAPQYAV
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattctcagtctgcgcttaaagaatctcaacgcgctgaaaggcgaatggaagatc
gacttcacaaaagagccattttccagcaacggcttgtttgccattaccggcccaaccggc
gcaggaaaaaccacgctgttggatgccatctgtctggcgctgtaccatgaaacacctcgc
ttgggtctgctttccgccagccaaaatgatctgatgacccgcgacacggcagaatgtctc
gccgaggtagaatttgaggtgaaaggcgtgggataccgcgccttctggagccaacgtcgg
gcgagaaatgtcccagacggcaatttacagtcccccaaggccgagctcgcactcattgaa
ggaggcaaaatcctgtgtgaaaagctcaatgataagaaagagatgatcacacaactcacc
gggttagactttggccgtttcacacgttctatgatgctgtcgcaggggcagtttgccgct
ttcctcaatgcgaaagccgacgaccgggcggaactgctggaagagctaaccggcacggac
atttacggcctgatttccgagcacgtctatgacaagcacaaacaggcaaacatcgcgttg
agcacgctacaggcacgcgcatcaggtattcagttgctgaccgatgagcagcgccaacag
gtggaagtccagcttgccgaactgacccagcaagagcaacagggcaacattgagcgtgag
caagcactgactacgctacgctggtttgagcaactgacgtggcagcaaacacagctcacc
aacacgcagttgcaacacgcaagtgccgaatccgccattcagcaggccaagccgcagctc
gacaggttagccaatggcgaaccagcagaaaaactgaggccgttacatcaggaacgagaa
cgttatcgacaggaatcccttgcgctcactcagcagattgaacaactgtcaggaaagcag
gcctctgggcacactgcgctggcaacgttacgccagcaggaagagaaagcagagcagggc
gttattcagcacaaacaggtgctgcagcagcaagagttattgatcaatgaacaggttgta
ccgcttgaccatcgtattgccacgctgcaacagcaaaaaaaccaacagcaggacgaattg
gcaaaaacacagcttcgcctacaagctgacgaaaacaaacaaacgcagatagcagcggaa
caacagcaggccaaacaactgcttgaacagattcaagcttatcgccagcaacacgcacat
catcagcagtggggagaacaacttcccctgtggcgtacacagtttctgcaattgcgccag
cttcaggacgagcagcagaagctgagccaaaagcagacgcaacacaccgaacaagcggca
gcgctccaacaggaggctgcaacgctgacggcgcagcagcgtgaacaacaaacggtcgtt
gatgcagcccgtcagcaattcatacaacacgatgaaatgcggaaaaatcaggaagcgcat
cagccgcttgcagctctacgccagcggtttaatcaactcatcgatcaacaagccacacgc
cggcagctcgcaacagccagcgaccagttccagcgccttcatacgcgtaagcagcagcac
ctcgccaggcaagacgagatacaagggcatatcagccagtcagaaatattacgaaaacag
cagcagtctgatcatgagcagcgcagccagcatttggccgatctggaaatgctgtaccga
caggaagaacgtatcgttaaactggaagccgaaaggcagcggctacaggccggagaagcg
tgccctctgtgcggctcaaccgagcatccagcgattgaacgctatcaggcgttacaaccg
tctgaaacccaaaagcgcctgacggcacgacagcaggacgtgaaacagttaacaatggcg
ctggcgaatacgactgcacaactcgcctcgctggggcagcagcgggaacagttgcaacaa
gagatcgcacaactcgatagcgaacatcaaaccctgctgcaacagtggcaagatgtcagt
gagcgcttacaagttaactacacgttggaacagcagactgaaatcgcagcctggcttacg
caacgcgagaccgaggagcaggacattcgacagcacattaccgcacacgagcagttgcaa
aaacagtggcaggaaagtaaggattcactgacagtcgcagaagccctacagagggaactg
gatcagaaaactgtgctgaatacccagcaacgaacttcactaaacgatacgcaggcagat
acccttcagtcgcagcaaaatacgcagcaacggctcgcgcagcacactcaggaaatcacg
cagacgctggcaaacacgaatctgcctcttccggaagccactgcacaggatgactggttg
gcacagcgcgacagcgagtggcaaatatggaaaaccaaagaacaggatcaatcccgctta
attccccggttagccacgctggaaagcgatcttcagtatctgagccacagcgtgaccgag
acaacgcagcaattacaagcgcagcaacagcaactggagcagcgcaccgctctgctcaat
acgaaccagcaggaacgagtgacgcttttcggcgacaggcaaatcgccgcagtacgcgag
cagctacaacgaactagccagcaatatgataatgcgcttcggttagcgcaattagcacgt
cagcaggctgaaaccacgttgagccgcctgacgggagagctaacccgcacgcaacagcag
tatgagcagagcatgcatcaacgcgatagtgcgactgaacgattcactcaggctttgcag
caaagtgcttttgctgatgaaaccaccttcctgaatgcgctgcttgctgagcaggaacga
cagaccttgcaggtatggaaggaaaagctgtatcagagtttgcagcaggcagcagcactt
caccagcaggctgaacgggagctgctcgcccatcaacaaaagcgaccaacttctctgctg
gaagatgccacacaagaagcagtacagcagcagttggcaacgctggatgaaacgctgcat
ttcactgtgcggcagcagggagaaattcagcgtcaactgaacgacgatcgacaacagcgt
caaaatcagcaggatttgctcaatgagatcgcccaaagtcagcaaaagtatgacgactgg
agctgtcttaatacgctcatcggctcacaaagtgggcataaattccgtaagtttgcccag
gggctcaccttggatcatctggtttatctcgccaatctacagctctctcgtctgcacggg
cgctatatgttgaagcgaaaacccggtgacgatctggaactgctggtggtggacacctgg
caagcagacgccgaacgcgatacgcgcacgctgtccggcggcgagagctttctggtgagt
ctatcgctggcgctggcgttatccgatctggtcagccataaagccagcatcgactctctg
tttctggatgaaggcttcggcacgctagatgccgagacgctggatatcgcgctggatgcg
ctggataacctgaacgcctctggcaaaaccatcggcgtcattagccatgtcgacgccatg
aaggagcgtattccggtacagatcaaagtgcagaaggttaacggtctgggcgtcagcaag
ctagcaccgcagtatgccgtgtag
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integrated database retrieval system
