Pectobacterium parmentieri SCC3193: W5S_3391
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Entry
W5S_3391 CDS
T02514
Name
(GenBank) Exodeoxyribonuclease V, beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
pec
Pectobacterium parmentieri SCC3193
Pathway
pec03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
W5S_3391
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pec03400
]
W5S_3391
Enzymes [BR:
pec01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
W5S_3391
DNA repair and recombination proteins [BR:
pec03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
W5S_3391
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AAA_11
ResIII
Motif
Other DBs
NCBI-ProteinID:
AFI91462
UniProt:
A0A0H3I8C1
LinkDB
All DBs
Position
complement(3667168..3670779)
Genome browser
AA seq
1203 aa
AA seq
DB search
MKNTAPQSLDVMTLPLLGERLIEASAGTGKTYTLAALYLRLLLGLGKQAAYPRPLLVEEI
LVVTFTEAATEELRERIRARIHALRIACLRKSAQGENAGKHKDTSLAQLLEEIADHREAA
DVLLAAERQMDEAAIYTIHGFCQRMLSTNAFESGVLFEQMLIEDEQPLRRQACADFWRRY
CYPLPVEVARIVGLEWKGPENLLADLAPYLHGEAPAFRLPPEESETLLSRHEKIVATIDA
YKQRWLASASELEALIVASGVDKRSYSSKHLPNWLQKVTLWAEQLTLDYQLPKDLVRFSQ
QTLIEKTKKGAPPVHPVFEATEQLLAAPLSLRDLVIVRALSAIRDSVREEKRQRAELGFD
DLLSRLDDALQQPAGERLADAIRERYPVAMIDEFQDTDPQQYRIFRTLYVGQPQCGLLLI
GDPKQAIYAFRGADIFTYMHARGEVAAHYTLGTNWRSSHQMVRGVNRLFERLEHPFIFQN
IPFLPVNPAESKRSLVFDVAGQPQPALQFWLTGAEPIGVGDYQQQMARQCAAQIRDWLAA
SQRNEAWLITDDSQRLVKASDMSVLVRSRREASLIRDALSRLSIPSVYLSNRDSVFSTPE
ASDILWVLQAVLAPEQERTLRSAMATALMGLDAAQVDALGQSESAWDALVDEFAGYRALW
RQRGVLPMLRALMSQHQLSENLLASTEGERRITDILHIGELLQDASATLDSEHALVRWLS
QQIVQPNPQAESQQLRLESDRHLVQIVTIHKSKGLEYPLVWLPFISNFRVQDQGIYHDRD
SYQAVLDLQNNEESQALAEEERLAEDLRLLYVALTRSIYHCSVGVAPVQRSRKKDGSSDM
HHSALGYLLQRGQEADVATLVSELEGMVGDGVALTRLQTTEAPRWQPDSPELTALRARHI
ERPLRDNWRVTSYSGLQQHGSTNTQDLVPRLDIEAIGERQEVGETQLTPHTFPRGASPGT
FLHSLFETLDFTQPVDDDWLAEQLQLQGFEAHWHPVLKVWMDTLLTTPLDEQGITLSALE
NQDKQAELQFYIPIEAPMQAAQLDRLAKCYDPLSAQCPVLSFQQVKGMLKGFIDLVFRWE
GRYYLLDYKSNWLGPDASAYTQTAMAQSMAEHRYDLQYQLYTLALHRYLRHRIADYDYER
HFGGVFYLFLRGVEESHPGNGIFAFRPSAEFVFGLDALFKGDVFNGDAFKEKAPDDADTG
ISS
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
atgaagaacaccgcgccgcaatcattagacgtcatgacgttgccgcttctgggggagcgg
ttgattgaggcatcggccggaacgggtaaaacctatacgctggcggcgctttacctgcgc
ctgttgctggggctaggtaagcaagccgcgtatccacgcccgttactggtcgaggagatt
ctggttgtgacctttactgaggccgcgactgaagagctgcgtgagcgtattcgtgcaaga
atccacgcgttgcgcatcgcctgcctgcgtaaaagcgctcagggtgaaaatgcggggaag
cataaggatacgtcgctagcacaactgttggaggagattgcggatcatcgagaggctgcc
gatgtattgttggcagccgaacgacaaatggacgaggcggcgatttacacgatccacggt
ttctgccaacgcatgctcagtaccaatgcatttgaatccggtgtgctgtttgaacagatg
ctgatagaagatgagcaaccgttgcgccgtcaggcctgcgccgatttctggcgtcgctat
tgctatccgctgccggtagaggttgcgcgtattgtcggtctggagtggaaagggccggag
aatttgctagccgatctggctccgtatctgcacggcgaagcacctgcatttcgcttgccg
ccagaagagagcgaaacgttgctgagtcgacatgagaaaatcgtggcgacgatcgacgct
tacaaacaacgttggttggcatcagcatcggagctggaagcgctaatcgtggcgtcgggt
gtggataaacgcagctatagcagtaagcatctccccaattggctacagaaagtcacgctg
tgggcggagcagctcacgctggattatcaactgccgaaagatttggtgagattttcccag
caaacgttaatcgagaaaacgaagaaaggcgctccaccggttcatcctgtgtttgaggcg
acggagcaactgcttgcagcaccgctgtcactgcgtgatttggtcattgtacgtgcactg
tcggcaattcgggattctgtgcgtgaagaaaaacggcagcgtgcggaactggggtttgac
gatttgctgagccgtttggatgatgcattacaacagccggcaggagaaaggcttgctgac
gccattcgtgaacgttatccggtggcgatgatcgatgagtttcaggataccgatcctcaa
caataccgtatttttcgcacgctttatgtcgggcaaccgcagtgcgggctattgctgatc
ggtgaccctaagcaggctatttatgcatttcgcggtgcggatatttttacttatatgcat
gcgcgtggagaagttgctgctcattatacgttgggcacgaactggcgctcgtcgcatcag
atggtacgcggcgtaaatcgcctgtttgaacgtctcgaacatccttttatttttcaaaac
atcccttttctgccggttaaccctgctgaatctaagcgcagtttggtgtttgacgtcgcc
ggacagcctcagcccgcgctgcaattctggctaacgggggcggaaccgattggcgtggga
gattatcaacaacagatggcgcgtcagtgtgcggcgcaaattcgtgactggctggcggcc
agccagcgtaatgaagcctggttgataaccgatgattctcagcgtttggtcaaagcctct
gacatgagcgtgctggtgcgcagtcggcgtgaagcgtctctgattcgcgatgcgctgagc
cgtttatccatcccctcggtctacctgtctaatcgcgatagcgtgttcagtacgccggaa
gccagcgatatcttgtgggtgttacaggcggtgttggcaccggagcaggagcgcacgtta
cgtagcgcaatggcgacggcgttaatggggctggatgctgcacaggtcgatgcactgggg
caaagtgaatcagcgtgggatgcgctggtagatgagtttgctggctaccgtgcgctgtgg
cgtcagcggggtgttttaccaatgctgcgagcgttgatgagccaacatcagttgtctgag
aatttgctggcaagtacagagggtgaacgccgtattaccgatattctgcatattggcgaa
ttattgcaggatgcctcggcaacgcttgatagcgagcatgcgctggtgcgctggctatcg
caacagattgtccaacctaatccgcaggcagagagtcagcagttacgtctggaaagcgat
cgccatttggtgcagatcgtgacgatccataaatcgaaagggctggaatatccgctggtg
tggctgcctttcatcagtaatttccgcgtgcaggaccaggggatttatcacgatcgtgat
agctatcaggccgtgttggatctgcaaaataatgaagaaagtcaggcgctagcggaagaa
gaacggctggcggaagatttacgtctgttgtatgtcgcattaacccgttctatctaccac
tgtagcgttggcgtcgcgcccgttcagcggtcgcgtaagaaagatggtagcagcgatatg
catcacagcgcgttgggctatttgctccagcggggtcaagaggcggatgtcgccaccttg
gtcagcgagcttgagggaatggtgggcgacggtgttgcattgacgcggctacagacgacg
gaagcaccgcgttggcaaccggatagcccggaattgactgcgttgcgggctcgacatatt
gaacgcccgctgcgtgataattggcgagtaaccagttattcagggcttcagcaacacggc
agcacaaacacgcaggatctggtgccacgtctggatattgaagcgataggtgaacgtcag
gaagtgggggaaacccaattgacgccgcatacgttcccgcgcggtgcgagtccagggacg
tttttgcatagcctgtttgaaacgctggactttacccaaccggttgatgatgactggctg
gccgagcagttgcagctacagggatttgaagcacactggcatccggtgttgaaggtgtgg
atggatacgcttttgactacgccgcttgacgagcaaggaattacgctatcggcactggag
aatcaggataagcaggctgaattacagttctatataccgattgaagctccgatgcaggcg
gcgcaactcgatcgattggcaaagtgctacgacccgttatctgcacagtgtcccgtgctg
tcgtttcaacaggttaaaggcatgctgaaagggtttatcgatctggtctttcgttgggaa
gggcgctattacctgctcgactataaatccaactggctcggccccgatgccagcgcttat
acccaaactgccatggcgcagtcgatggctgagcaccgttatgatttgcaataccaactc
tacacgctggccttgcaccgctatctacgtcaccggattgcagattatgactatgagcgc
cattttggtggggtgttttatctgtttttacgcggcgttgaggaatctcatcccggtaat
ggcatttttgcttttcgcccctctgctgaatttgttttcgggcttgatgcgttgttcaaa
ggtgatgtgttcaacggtgatgcgtttaaggaaaaggcacctgatgatgctgacacagga
atttcatcatga
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