Pectobacterium parmentieri SCC3193: W5S_3686
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Entry
W5S_3686 CDS
T02514
Name
(GenBank) 23S rRNA (uracil-5-)-methyltransferase rumA
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pec
Pectobacterium parmentieri SCC3193
Brite
KEGG Orthology (KO) [BR:
pec00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pec03009
]
W5S_3686
Enzymes [BR:
pec01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
W5S_3686
Ribosome biogenesis [BR:
pec03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
W5S_3686
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
PCMT
RrnaAD
MTS
Methyltransf_11
TRM5-TYW2_MTfase
Methyltr_RsmB-F
Cons_hypoth95
Methyltransf_4
FtsJ
Ubie_methyltran
Methyltransf_23
PDGF
Methyltransf_32
Methyltransf_15
CMAS
Motif
Other DBs
NCBI-ProteinID:
AFI91749
UniProt:
A0A0H3ICJ3
LinkDB
All DBs
Position
complement(3961920..3963269)
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AA seq
449 aa
AA seq
DB search
MAQFYSPNRRVTTRKAVPAKNLTVTVASLDPFGQGVARHEGKTVFVTGVLPGEQAEVQLT
EEKRQFSHAKLKRLLTPSPQRVEPQCPHFTRCGGCQQQHAEITLQQSSKTAALMRLMTRE
TGVELPAASLIAGTPYAYRRRARLALYFQAKEQRLLMGYRQPNSHDLVDIKACPVLRPEL
EALLQPLRECLSRLKAVKRLGHVELVQAENGPLLVLRHLDPLHPSDEQALRDFAQQQSVS
VYLAPDADSLTCLHGEEPVYHVAGLTLAFSPRDFIQVNDAVNQQMVAQALAWLDVQPQDR
ILDLFCGMGNFTLPLAQRAASIVGVEGVTALVEKGRENARRNALSNVTFFHQNLEDDVTQ
QPWAAQGFDKILLDPARAGAAGVMEQITRLAPKRVVYVSCNATTLARDSKVLLAAGYRLA
NVAMLDMFPHTGHLESMALFLHDSGTRKA
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaattctactctccaaaccggcgtgtgacgacccggaaagcagttccagcgaaa
aacctcactgtcacggtggcgtcacttgacccgtttgggcagggcgtagcgcgtcacgaa
ggcaagacggtttttgtcacaggtgtgctgccgggagagcaggccgaggtgcaactgacg
gaagagaagcgtcagttttcacatgccaaacttaaacgcctgttgacgcctagtccgcag
cgcgttgagccgcaatgtcctcattttacccgctgtggcggttgccaacagcagcatgcg
gaaattactctgcagcagagcagcaaaaccgcagcattgatgcgcctgatgacgcgagaa
acgggcgttgaactgccagccgcatcgctgattgctggcacaccttatgcctatcggaga
cgtgcgcggcttgcgttatactttcaggcaaaagagcagcggctattgatgggctatcgg
cagcccaattctcacgacctagtggatatcaaagcctgtccggtattgcgaccagagctt
gaagcgctgctgcaaccgctgcgcgaatgtctgagtcgactaaaagcggtgaagcgtctt
gggcatgtggaactggtgcaggcggagaacggtccgctgctggtgctgaggcatcttgat
ccactgcatccatcggatgagcaggcgttgcgtgattttgcccagcagcagagtgtctcg
gtttatctggcaccggatgccgactcgttgacgtgcctacatggcgaagagccggtttat
cacgtcgccgggctgacgctggcatttagcccacgtgattttattcaggtcaatgacgcg
gttaaccagcagatggtcgcgcaggcactggcgtggctggatgtacaaccgcaggataga
atattggacctgttttgcggtatgggtaatttcacgctgccgctggcacagcgtgccgcc
agcattgtcggtgtggagggggttaccgcactcgtcgagaaagggcgcgaaaatgcccgg
cgcaatgcgttgtccaatgtcacattttttcaccaaaatcttgaggatgacgtcacacag
caaccgtgggcggctcaaggttttgataagatattacttgatccggcacgtgcaggtgcg
gcaggcgtgatggagcaaataaccagattggcaccgaaacgggtggtgtatgtttcctgt
aacgccacgacgctagcacgcgacagtaaagtattactcgcagccggttaccggctggcg
aatgtcgcaatgttggatatgtttccacataccggacaccttgaatcgatggcactgttt
ttgcacgattccggcacgcggaaggcttaa
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