Pectobacterium parmentieri SCC3193: W5S_3970
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Entry
W5S_3970 CDS
T02514
Name
(GenBank) RNA polymerase-associated protein rapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
pec
Pectobacterium parmentieri SCC3193
Brite
KEGG Orthology (KO) [BR:
pec00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pec03021
]
W5S_3970
Transcription machinery [BR:
pec03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
W5S_3970
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
Cas3-like_C_2
AAA_34
Motif
Other DBs
NCBI-ProteinID:
AFI92033
UniProt:
A0A0H3I975
LinkDB
All DBs
Position
4289187..4292090
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AA seq
967 aa
AA seq
DB search
MPFTLGQRWISDTESELGLGTVVAVDTRMITLLFPASGENRLYSRSDAPITRVMFNPGDT
VTSHEGWQLKVDDVREEKGLLVYCGQRLDDETQAELREVFLDSKLTFNKPQDRLFAGQID
RMDRFALRYRARKHQNEQALQQWGGLRGMRASLIPHQLHIAHEVGQRHAPRVLLADEVGL
GKTIEAGMIIHQQLLAGRANRVLIIVPETLQHQWLVEMLRRFNLLFSLFDDERYAEAKLD
SSNPFETEQLVICSLGFVQRSAQRFAQLVNADWDLLVVDEAHHLVWSEESPSPEYQAIEA
LARATPAVLLLTATPEQLGQQSHFARLRLLDPNRFHDYQEFVAEQQQYRPVADAVTLLLA
GETAQTAELNALSDLLGEQDIEPLLKSINSDSDDNQKARQELITMLMDRHGTSRVLFRNT
RQGVKGFPQRILHQIRLPLPSQYQTAIKVSGIMNANKPLETRARDMLYPEQIYQQLEGDD
ATWWNFDPRVEWLLNYLTANRDEKVLVICAQAATALQLEQVLRTREAIRAAVFHEGLSIL
ERDRAAAYFASEEEGAQVLICSEIGSEGRNFQFASHLVMFDLPFNPDLLEQRIGRLDRIG
QAKEIQVLVPYLENTAQAMLVRWYHEGLDAFEHTCPTGRTIYDAHHTQLIERLTTVGEQQ
GLDEFIHTCRQQHDSLKQQLEQGRDRLLEMHSNGGKQAQLLAQAIAEQDNDVNLVTFSLN
LFDIVGINQEDRSDNLIILTPSDHMLVPDFPGLPQDGCTITFDRDQALSREDAQFISWEH
PLIRNGLDLVLSGDTGSCAVSLLKNKALPVGTLLAELVYVVEAQAPKHLQLTRFLPPTPV
RLLMDRKGTDLAAQVEFESFNRQLNAVNRHTSSKLVNAVQSDVHAMLQQAEALVETQARQ
LITEAQQQADLQLRRELERLEALKAVNPNIREDELTALENQREQVLSNLHEANWRLDAIR
LVVVTHQ
NT seq
2904 nt
NT seq
+upstream
nt +downstream
nt
atgccttttacacttggtcagcgctggatcagcgatacagaaagcgaacttggactggga
acggttgttgccgtcgatacgcgtatgataacgctgcttttccctgccagcggtgaaaac
cgactttattcccgcagcgatgcccccatcacccgcgtgatgttcaaccccggcgacacc
gttaccagccatgaaggttggcagctcaaggttgatgacgtgcgggaagaaaaagggttg
ctggtgtattgcggccaacgcctggacgatgaaacgcaggcagaactgcgtgaagtcttt
ttagacagtaagctcacgttcaacaaaccgcaagatcgcctattcgccggacagattgat
cgtatggatcgctttgctctgcgctatcgcgcccgcaagcaccagaacgagcaggcactg
caacaatggggcggtttgcgcggcatgcgtgccagcctcatcccccatcagcttcacatc
gctcatgaagttggccaacgccatgcgccacgtgttttgctggcggacgaagtcggtctg
gggaaaaccattgaagccggaatgatcatccaccagcaactgctggcgggtcgtgccaat
cgcgtgctgattatcgtaccggaaaccctgcaacatcagtggctggtcgaaatgctgcgc
cgctttaacctgctgttctcactgtttgacgacgagcgttatgccgaagccaagctggac
agcagcaatccgtttgaaactgaacagttggtgatctgctcactgggatttgttcaacgc
agtgcccagcgttttgcacagttggtcaacgccgactgggacctgctggtggtggatgaa
gcccaccatctggtttggagcgaagagagccccagcccggaataccaggctattgaagct
ctggctcgcgcgacccctgccgttctgctattaaccgcaacgccggaacagcttgggcag
cagagccactttgcgcgcttacgcctactcgatcccaaccgtttccacgactatcaggaa
ttcgttgccgaacagcagcagtaccgtccagtcgccgatgccgtcactctgctattagcg
ggtgaaaccgctcagacggctgagctaaatgcgctgagcgatcttctgggtgaacaggac
attgagccgttgctgaaatccatcaacagcgacagcgacgacaaccagaaagcacgtcag
gaactgatcaccatgctgatggatcgccacggcaccagccgtgtgctgtttcgcaatacg
cgtcagggcgttaaaggcttcccgcagcgtatcctgcatcaaatccgtctgccgctgccg
tcgcagtaccaaaccgccattaaagtgtccggcattatgaacgcgaataagccgttggaa
acacgcgcccgcgatatgctgtatccagaacaaatttatcaacagctcgaaggggacgat
gcaacctggtggaacttcgatccgcgtgtcgaatggttgctgaactacctgactgccaat
cgtgatgaaaaagtgctggtaatctgtgctcaggccgccacagcgctacagttggagcag
gtgctgcgcacacgtgaggctattcgtgccgccgtcttccatgagggattgtctattctg
gaacgtgaccgcgccgccgcttatttcgcttccgaagaagaaggcgcacaggtgctgatc
tgttcagagatcggctccgaaggccgtaacttccagtttgccagccatttagtgatgttc
gatctgccgttcaaccccgacctgctggaacagcgtattggtcgtctggatcgtatcggg
caagcaaaagaaattcaggttctggtgccgtatctggaaaatactgcacaggccatgttg
gtacgctggtatcacgaagggctggatgcgtttgaacacacctgcccgacaggtcgcact
atctatgatgcacaccatacgcagttgattgagcgactgacgaccgtcggcgaacagcag
ggattggatgaatttatccatacttgccgtcagcagcacgacagcctgaagcaacagctt
gaacaaggccgcgatcgtctgctggaaatgcattctaacggtggcaagcaggctcagttg
ctggcacaggccattgcagaacaggataatgacgtcaatctggtgacattttccctgaac
ctgtttgatattgttggcatcaatcaggaagatcgcagcgataatctgatcatactgacg
ccatccgatcatatgctggtgccggatttcccaggtttgccgcaggacggctgtacgatc
accttcgatcgcgatcaggcgctttcccgcgaagatgcacagtttatcagttgggaacac
ccgctcatccgtaacgggctcgatctggtgctgtccggcgataccggaagctgtgcggtt
tccttgctgaaaaataaagcgctaccagtcggcacactgctggctgagctagtttacgtt
gtggaagctcaggcaccaaaacacctgcaactgacccgtttcctaccgccaacaccggtt
cgcctgctgatggatcgtaaaggcacggatctggcggcacaggttgagtttgagagcttc
aaccgccagctcaacgcggtaaaccgccatacgtccagcaagctggtgaatgcggtgcaa
tccgatgttcatgccatgctgcaacaggcagaagcattggtggaaacgcaggcgcgtcag
cttatcaccgaagcgcaacagcaggccgatctgcaactgcgccgcgagttggaacgtttg
gaagcactgaaagccgtcaaccctaacattcgtgaagacgaactgaccgcgctggaaaat
cagcgcgagcaggtgctaagcaacctgcacgaagccaactggcgtctggatgcgatccgt
ctggtcgtggtgacgcaccagtaa
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