Pectobacterium parmentieri SCC3193: W5S_4366
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Entry
W5S_4366 CDS
T02514
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pec
Pectobacterium parmentieri SCC3193
Pathway
pec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
W5S_4366
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pec03021
]
W5S_4366
03019 Messenger RNA biogenesis [BR:
pec03019
]
W5S_4366
Transcription machinery [BR:
pec03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
W5S_4366
Messenger RNA biogenesis [BR:
pec03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
W5S_4366
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_22
AAA_25
S1CSD-TOTE-2
AAA
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
AFI92418
UniProt:
A0A0H3I8X1
LinkDB
All DBs
Position
complement(4710321..4711673)
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AA seq
450 aa
AA seq
DB search
MVEGCYRGTDDPAIPFTLIVRDLPRVKEPTTMNLTELKNTPVSELITLGENMGLENQARM
RKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRF
NLRTGDTISGKIRPPKEGERYFALLKVNEVNYDRPENARNKILFENLTPLHANSRLRMER
GNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLI
DERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITR
LARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDE
VIYEEFKGTGNMELHLARKIAEKRVFPAIDYNRSGTRKEELLTTSEELQKMWILRKIIHP
MGEIDAMEFLINKLAMTKTNDEFFDMMKRS
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
gtggttgaaggctgttatagaggcacggatgatcctgccataccattcacgttaatagtt
cgagatttaccccgagttaaagaacccaccactatgaatcttaccgaattaaagaatacg
ccagtttctgagttaattactcttggcgaaaatatgggactggaaaaccaggcccgcatg
cgtaaacaggatattatcttcgcgattctgaagcagcatgccaaaagcggcgaggatatt
ttcggcgatggcgtgctggagatactgcaggatggcttcggctttctccgctccgcagac
agctcctacctcgcaggccccgatgatatctacgtttctcccagccaaatccgccgtttc
aacctccgcactggtgacaccatttctggcaagattcgcccgccgaaagaaggtgagcgc
tattttgcactgctgaaagttaacgaagttaactacgacagacctgaaaacgcccgcaac
aagatcctgttcgaaaacttaactccactgcatgcaaactctcgtttgcgcatggagcgt
ggtaacggttcgacagaagatctgacggcgcgcgtactggatttggcttcaccaattggc
cgtggtcaacgtggtctgatcgttgcaccgccgaaagcaggtaaaaccatgctgctgcag
aatattgcgcagagcattgcttacaaccatcctgactgtgtgctgatggtgctgctgatt
gacgaacgtccggaagaagtgaccgagatgcagcgtctggtgaaaggtgaagtggttgcg
tcaacgtttgacgaaccggcttcccgtcacgttcaggttgctgaaatggtgatcgaaaaa
gcgaagcgtctggttgagcataagaaagacgtgatcatcctgctggactccattactcgt
ttggcgcgtgcttataacaccgttgttcctgcgtcaggtaaagtgttgactggtggtgtg
gatgccaacgccctgcatcgtccgaagcgtttcttcggtgctgcacgtaacgttgaggaa
ggcggtagcctgaccatcatcgccaccgcgctggttgatactggctcgaagatggacgaa
gtgatttacgaagaatttaaaggtacaggtaatatggaactgcacctggcgcgtaaaatc
gcagaaaaacgcgtgttcccggcgattgattacaaccgttccggtacgcgtaaagaagaa
ctgcttactacctctgaagaattgcagaagatgtggattctacgcaaaatcatccaccca
atgggcgagatcgatgcgatggagttcctcatcaacaagctggcgatgacgaaaaccaac
gatgaattcttcgatatgatgaaacgttcataa
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