Psittacula echo (Mauritius parakeet): 308221641
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Entry
308221641 CDS
T12082
Symbol
PRPF19
Name
(RefSeq) pre-mRNA-processing factor 19
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
pech Psittacula echo (Mauritius parakeet)
Pathway
pech03040
Spliceosome
pech04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pech00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
308221641 (PRPF19)
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
308221641 (PRPF19)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pech03041
]
308221641 (PRPF19)
04121 Ubiquitin system [BR:
pech04121
]
308221641 (PRPF19)
03400 DNA repair and recombination proteins [BR:
pech03400
]
308221641 (PRPF19)
Enzymes [BR:
pech01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
308221641 (PRPF19)
Spliceosome [BR:
pech03041
]
Complex B
Other components
Prp19 complex
308221641 (PRPF19)
Complex C
Prp19-CDC5 complex
308221641 (PRPF19)
Ubiquitin system [BR:
pech04121
]
Ubiquitin ligases (E3)
U-box type E3
308221641 (PRPF19)
DNA repair and recombination proteins [BR:
pech03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
308221641 (PRPF19)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40
Beta-prop_IFT122_1st
WD40_WDHD1_1st
Prp19
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
Beta-prop_EML_2
WD40_Gbeta
WDR55
Beta-prop_WDR90_POC16_2nd
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
DSE1_N
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_SCAP
Beta-prop_Aladin
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_NOL10_N
Beta-prop_EIPR1
CFAP251_N
Beta-prop_HPS5
NBCH_WD40
ASA1
U-box
Beta-prop_Vps41
PAC11
PEP5_VPS11_N
Beta-prop_DCAF4
WDR90_beta-prop_4th
Beta-prop_WDR41
Beta-prop_RIG_2nd
WD40_RFWD3
Beta-prop_WDR19_1st
Beta-prop_VPS8
Beta-prop_Nup120_160
PROPPIN
Beta-prop_ACSF4
Cytochrom_D1
Beta-prop_DCAF12
RMC1_N
zf-Nse
Beta-prop_WDR35_TULP_N
TRM82_WD
Alpha_humulene_synt
DUF1830
CCDC13
ATG16
GP3
Cep57_MT_bd
Motif
Other DBs
NCBI-GeneID:
308221641
NCBI-ProteinID:
XP_080474924
LinkDB
All DBs
Position
5:complement(88216740..88221861)
Genome browser
AA seq
504 aa
AA seq
DB search
MALICSISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPVNNQPLSEEQLIDIKVAHP
IRPKPPSATSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAGLIVPQAVPSSQPNVAGTGEPMELGELAGMTPEIIQKLQDKA
TVLTTERKKRGKTVPEELVKPEELSKYRQVASHVGLHSASIPGILALDLCPSDTNKILTG
GADKNVIVFDKSSEQILATLKGHSKKVTSVVFHPSQDLVFSASPDATIRIWSVPNASCVQ
VVRAHEGSVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDESSGCALTCAQFHP
DGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWD
LRKLKNFKTLQLENNFEVKSLIFDQSGTYLALGGTDVQIYICKQWTEILHFTEHSGLTTG
VAFGHHAKFIASTGMDRSLKFYSL
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atggcgctcatctgctccatctccaacgaggtccccgagcacccgtgcgtgtccccggtg
tccaaccacgtgtacgagcggcgcctcatcgagaagtacatcgcggagaacggcaccgac
ccagtgaacaaccagccgctgtccgaggagcagctcatcgacattaaagtcgcccacccg
atccgccctaagcctccatctgccaccagcatcccggccatcctgaaggccctgcaggat
gaatgggatgctgtcatgctgcacagcttcaccctgcgccagcagctccagaccacgcgc
caggagctgtcgcatgccctctaccagcacgatgctgcctgcagggtcatcgcccgcctc
accaaggaggtcacggccgccagagaagctctggcaaccctgaagcctcaggccgggctc
atcgtgccccaggcggtgccgtcctcccaaccgaacgtggccggaactggggagcccatg
gagctgggggagcttgcaggcatgaccccggagatcatccagaagctccaagacaaggcc
acggtgctcaccacggagcgtaagaagagagggaagacggtgccggaggagctggtgaag
ccggaggagctcagcaagtaccggcaggttgcttcacacgtggggctgcacagcgccagc
attccagggatcctggccttggacctgtgtccttctgacaccaacaagatcctcactggt
ggggcagacaaaaacgtcattgtctttgacaagagctcggagcagatcctggcaacgctc
aaggggcattccaagaaggttaccagcgtggtgttccacccatcccaggacctggtgttc
tcagcctctccagatgccaccatccggatctggtctgtccccaacgcctcctgcgtgcag
gttgtccgtgcccacgagggctctgtgacagggctgagcctccatgccacgggtgactac
ctcctgagctcctcagatgatcagtactgggctttctcggatatccagacaggccgtgtg
ctcaccaaggtgacggatgagagctccggctgtgctctcacctgcgcccagttccaccct
gatgggctcatctttggaacgggaaccatggactctcagatcaagatctgggatctgaag
gaacgcaccaacgtggccaacttcccaggacactccggccccatcaccagcatcgccttc
tcggagaacggctactacctggccacggcagcggatgactcctctgtcaagctctgggac
ctgcgcaagctcaagaacttcaagaccttgcagctggaaaacaacttcgaggtgaagtct
ctcatctttgaccagagcggtacctacctggcgctgggcgggacggatgtgcagatctac
atctgcaagcagtggactgagatcctccacttcacagagcacagtggcctcaccacggga
gtggcttttggccaccacgccaagttcatcgcctccacgggcatggaccgaagcctcaag
ttctacagcctgtag
DBGET
integrated database retrieval system
