Psittacula echo (Mauritius parakeet): 308221959
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Entry
308221959 CDS
T12082
Symbol
VPS39
Name
(RefSeq) vam6/Vps39-like protein isoform 1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
pech Psittacula echo (Mauritius parakeet)
Pathway
pech04140
Autophagy - animal
pech04142
Lysosome biogenesis
pech04145
Phagocytosis
pech04148
Efferocytosis
pech05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
pech00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
308221959 (VPS39)
04142 Lysosome biogenesis
308221959 (VPS39)
04140 Autophagy - animal
308221959 (VPS39)
04148 Efferocytosis
308221959 (VPS39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
308221959 (VPS39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pech04131
]
308221959 (VPS39)
Membrane trafficking [BR:
pech04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
308221959 (VPS39)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
VPS18_solenoid_2nd
DUF4145
Beta-prop_RIG_2nd
Lgl_C
EcoR124_C
Motif
Other DBs
NCBI-GeneID:
308221959
NCBI-ProteinID:
XP_080475538
LinkDB
All DBs
Position
5:81613965..81640598
Genome browser
AA seq
881 aa
AA seq
DB search
MHDAFEHVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIKKDIGCNRFEVTLEKSNK
NFSKKIQQIHVVSQFKILVSLLGFLFKPENNIYVHDLLTFQQITTVSKAKGASLFTCDLQ
QSDTGEEVLRMCVAVRKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVGFKRDY
YLIRVDGKGSIKELFPTGKQLEPLVAPVADGKVAVGQDDLTVVLNEEGVCTQKCALNWTD
IPIAMEHQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGTNIIYVASNHFVWR
LIPVSIATQIQQLLQDKQFELALQLAEMKDDSDSEKRQQIHHIKNLFAFNLFCQKRFDES
MQVFAKLGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPGLSGAELEKAHLALIDYLTQKRS
QLVKKLNDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRLENN
HCHIEESEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQYLQH
LGTENLHLVFSYSVWVLRDFPEDGLKIFTEDLPEVEALPRDKVLSFLIENFKSLTIPYLE
HIIHVWEETGADFHNCLIQLYCEKVQALMKEYLNSFPPDKTPVPAGEEGGDLGDYRKKLL
LFLEKSSWYEPSRLISDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTNMAENYCHK
HYDRNKDGNKDVYLSLLRMYLSPPSVHCLGPIKMEVLEPQANLQAALQVLELHHSKLDTT
KAINLLPANTQISEIRVFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQQVKCI
ITEEKVCTVCKKKIGNSAFARYPNAKVVHYFCSKEVNTLDT
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgcctttgagcatgtgccgatcctggagaagctgccgctgcagatcgactgc
ctggcggcctgggaggaatggctccttgttggtaccaaacaagggcatcttctgctttac
aggatcaagaaagacataggttgcaatagatttgaagtgacgctagagaaatccaacaag
aacttctcaaaaaagattcagcagattcatgttgtttctcagtttaaaattctggtcagt
ctattaggatttttatttaaaccagaaaataacatttatgtccatgacctgttgacattt
caacaaatcaccacggtttccaaggcaaaaggtgcatctctcttcacttgtgatcttcag
cagtcagatacaggggaagaggtgctgagaatgtgtgtggcagtgcggaagaagctacaa
ctttatttttggaaggacagagagttccatgagctacagggggacttcagtgtacctgat
gtacccaagtccatggcctggtgtgaaaactccatctgtgtaggctttaagagggactat
tacctgatacgggtggatggaaaaggatccatcaaagaactgtttcccacagggaagcag
ctggaaccattggtagctcctgtagcagatggaaaagttgcagttggccaagatgatcta
acagttgtgctcaatgaagaaggggtctgtactcagaaatgtgccttgaattggacagat
attcctatagccatggagcaccagcctccctacatcattgctgttttgccgaggtatgtg
gagatccgtacttttgaaccccggctactggtacagagtattgagctgcagagaccacgc
ttcatcacctctggaggcacaaatattatatatgtggcaagtaatcacttcgtttggcgg
cttattccggtgtccatagccacacagatccagcagcttctgcaggacaagcaatttgag
ttggctttgcagttggcagaaatgaaagatgattcagatagtgagaagcgacaacaaatt
caccacataaagaacctctttgccttcaaccttttctgccagaagcgcttcgatgaatcc
atgcaagtttttgccaagcttggtacagatcccactcatgtgatgggtctgtatcctgac
ctcctgcccacagattacaggaaacagctacagtatcccaaccccctgccagggctctct
ggggcagagctggagaaggcgcatttagctctgatagactacctaactcaaaagagaagt
cagctggtgaagaagctaaatgattctgaccatcagtctagtacctcacccctcatggaa
ggaacacccactatcaaatccaaaaagaagctgctacaaatcattgataccaccctgtta
aagtgttacctccatacaaatgtagcactggtggcaccactgctacgtctggaaaacaat
cactgccatattgaagagagtgagcatgtactaaagaaggcacacaaatatagtgagctg
ataatactgtatgagaagaaaggtctgcatgagaaagcattacaggtattggtggatcaa
tcaaagaaagccaactcacctttgaaaggtcacgagaggacagtgcaatatctgcagcat
ttgggcacagagaacttgcacttagtattttcctactctgtctgggtgctaagagatttt
cctgaagatggactgaaaatatttacagaagacctccccgaagtggaagctttgccacga
gacaaagtgctgagtttcttgatagaaaatttcaaaagcttgactattccttatctggag
cacatcattcatgtctgggaagaaactggtgcagactttcataactgtctgatccagctg
tactgtgaaaaagtgcaggccttgatgaaagaatatctaaattctttccctccagataaa
actccagtgcctgctggggaggaaggaggagacttgggggattaccggaaaaagcttctg
ctttttctggagaagtctagctggtatgagccaagccgactaatcagtgacttccccttt
gatggtctcctagaagaacgtgctctgctcttgggtcgtatggggaagcatgagcaagct
ctgtttatttacgttcatattttgaaggacaccaacatggctgaaaactactgccataaa
cattatgacagaaacaaagatggcaacaaagatgtctacttgtcattgctccggatgtat
ctctctccacctagtgttcactgcctgggaccaatcaagatggaagtgctggaacctcaa
gccaatctgcaggctgctctgcaggttttggaactacatcacagcaaactggataccacc
aaggcaataaacctgctcccagcaaatacacagataagtgagattcgagtcttcttagag
aaagtccttgaagaaaatgctcagaagaaaagatttaatcaagtactcaagaatcttctc
catgcagagtttctgagggtccaggaggagaggatcttgcatcagcaagtgaagtgcatt
attaccgaggagaaggtgtgcactgtatgtaaaaagaagataggtaacagtgcatttgct
cgataccctaatgcaaaagttgtgcattatttctgctccaaagaagtcaacacattggat
acctga
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