Psittacula echo (Mauritius parakeet): 308222084
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Entry
308222084 CDS
T12082
Symbol
VPS18
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
pech Psittacula echo (Mauritius parakeet)
Pathway
pech04140
Autophagy - animal
pech04142
Lysosome biogenesis
pech04145
Phagocytosis
pech04148
Efferocytosis
pech05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
pech00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
308222084 (VPS18)
04142 Lysosome biogenesis
308222084 (VPS18)
04140 Autophagy - animal
308222084 (VPS18)
04148 Efferocytosis
308222084 (VPS18)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
308222084 (VPS18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pech04131
]
308222084 (VPS18)
Membrane trafficking [BR:
pech04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
308222084 (VPS18)
Hops complex
308222084 (VPS18)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pep3_Vps18
VPS18_solenoid_2nd
VPS18_solenoid_1st
VPS18_RING_C
Clathrin
zf-C3HC4_2
zf-RING_Vps41
aq_1631
zf-RING_16
zf-RING_5
zf-RING_11
Lact-deh-memb
zf-RING_UBOX
zf-ANAPC11
zf-RING_2
zf_RING_Vps8
DUF8221
Nup54_57_C
LETM1_C
STX17_N
DUF5600
RBSN_mid
zf-rbx1
DUF1664
KNOX2
Motif
Other DBs
NCBI-GeneID:
308222084
NCBI-ProteinID:
XP_080475750
LinkDB
All DBs
Position
5:complement(83113319..83126526)
Genome browser
AA seq
974 aa
AA seq
DB search
MASILDEYEDSLYRSAAVQHSRTSVGIPHSGYVNARLEKETPIFNKQRIDFAPPEKINSL
VVSSNQLCMSLGKDTLLRIDLGKPDEPNQVELGRKDEARVYKMFLDHTGSHLLIALNTSE
CLYLNRSVQKVRALSRWKGHLIESVGWNKFLGTETNTGPILVGTAQGQIYEAEISVSEGS
LFSTNPDQYFRQVYTLEEESGPAPVCCLEIERGMEGKFFIIATTQKRLFQFVGKVPEGTE
QQGFSSIFALHADHLPSFREFPASFGFSEIAFYTPKLRSNPRSFAWMMGNGVLYGTLDYS
RPDSILSDERVWVYPSDIDITVNKPISIVLTQFHFLLLLPDRVKAVCTLNGQVVFQDMFL
EKFGLLTRMIKDPTVQQIWIHTEKVVFRYHVQRESRDVWKMYMNMNKFDLAKEYCKDRPE
CLDIVLAKEAEHCFQNKRYLDSAKCYALTQNYFEEIALKFIEAKQEEALMEFLIKKLSNL
KPSEKTQTTLLTTWLTELYLNWLGILEGDPSQRNLYLDTREKFRTFLSSPKNKDCLFNNR
ASIYELLASHGDTEHMVYFAVIMQDYERVVAHHCQHDEYDEALNVLSRHRDEKLFYKFSP
VLIQHIPKKVVDAWISMGSRLDARNLIPALVNYSQSASTQQINEAIRYMEFCVYQLEETQ
QAIHNYLLSLYALCRPDSLLSYLEQAGTNPNRIHYDLKYALRLCAEHGHHHACVHIYKVM
ELYEEAVDLALQVDVDLAKSCADLPEDDEELRKKLWLKIARHVVQEEKDVKKAMACLSSC
ALLKIEDVLPFFPDFVTIDHFKEAICNSLEDYNKHIEELKREMEEATQSAKRIREDIQEM
RNKYGSVEPQEKCAACDFPLLNRPFYLFLCGHMFHYDCLLQAVFPNLPAYKQAKLEDLQK
KLAATSQPSKSHHRPKDTDTISLGKGQQSREQIKADIDDIVAAECVYCGELMIRSIDKPF
IDPQKYEEEMQSWL
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccattctggacgagtacgaggactcgctgtaccgctccgccgccgtgcagcac
agccgcaccagcgtgggcatcccgcactccggatatgtgaatgcacgtctggagaaggaa
acaccaatatttaacaagcaaaggattgattttgctcctccagagaaaattaacagctta
gtggtctcctctaaccagctgtgtatgagccttggcaaagacacccttctcaggattgat
cttgggaagccagatgaacctaatcaggtggagctgggacgcaaagatgaagccagagtc
tacaagatgtttttggaccacacaggctcccatctcctgattgctctgaacaccagtgaa
tgcctttacctgaacagaagtgttcagaaagtgcgagcactctcccgctggaaaggccac
ttgattgaaagtgtgggctggaacaaattccttggtacagagaccaacactgggcctatc
ctggtggggacagcccaggggcagatctacgaggctgaaatctctgtcagtgagggaagc
ctcttcagcactaatccagaccagtacttccggcaggtctacactctggaggaggaatca
ggacctgctccagtctgctgcttggagattgaacgaggaatggaagggaaattttttatt
atagccaccactcaaaagagacttttccagtttgttggcaaagtgcctgaagggacagag
cagcaaggcttcagctccatatttgctctgcatgctgaccatttgccaagcttccgggag
tttccagccagctttggtttcagtgagatagccttttacaccccaaaactgcgttccaac
ccacgttcctttgcctggatgatgggaaatggtgttttgtacggtacactggattatagc
cgtcctgattcaattttgagtgatgaacgggtctgggtttatccttctgatattgacata
actgtgaacaagccaatatccattgtacttacccagttccacttcttgttgctgctgcct
gatcgagtgaaggctgtatgcactctgaatgggcaggttgtttttcaagatatgttcctg
gagaagtttggtttactgacacgcatgatcaaagatcctacagtccagcagatctggatc
cacactgaaaaagtggtgttccgctaccatgtccagcgggaatctagagatgtgtggaag
atgtatatgaatatgaacaaatttgatttagccaaagagtattgtaaagatcgtccagag
tgcctagatattgtgctggcaaaagaagcagagcactgcttccaaaacaagaggtatcta
gacagtgccaaatgttacgcgctgacccagaactactttgaggaaattgcccttaagttc
attgaagccaagcaagaagaggccctgatggagtttctgattaagaagctgagtaaccta
aagccttctgagaagacacagaccactttgctgaccacatggttaacggagctctacctg
aactggttaggtatactggaaggagatccctcacagcgaaatctctatctcgatacacgg
gagaagtttcgcacattcctgagcagtcctaaaaacaaagactgtctgtttaataaccgg
gcatctatttatgagctgttggcaagccatggggacacagagcacatggtctactttgca
gtcatcatgcaggactatgagcgtgtagtagctcaccactgccagcacgatgagtacgat
gaggctctaaatgtgctgtccaggcacagagatgagaaactgttctataagttctctcca
gtcctcatccagcatattcccaagaaggtagttgatgcttggatttctatgggctctaga
ctggatgctaggaacctcatcccagcccttgttaactatagccagagtgccagcacccag
cagatcaatgaagccattagatatatggagttctgtgtctatcagttggaggaaactcag
caagccattcacaactatctgttgtctctgtatgctttgtgtcggccggattcactgctg
tcatacctggagcaagcaggaaccaacccaaacaggatccactatgacctgaagtatgca
ttgcgcctatgtgcagagcatgggcaccaccatgcatgtgtccatatttacaaagtgatg
gaattatatgaggaggctgtggatctcgccttacaggtggatgttgatcttgccaagtcc
tgtgcagatctccctgaagatgatgaggaactccggaagaagctctggttaaagattgct
cgccatgttgttcaggaagagaaggatgtcaagaaggcaatggcctgcctctccagctgt
gccctgctgaagattgaagatgtcttgccattctttccagactttgtcaccattgaccat
ttcaaggaggcaatctgtaactccctggaggactacaacaagcacattgaggagctgaaa
agggagatggaggaagccacacagagtgccaagagaatccgagaggacatccaggaaatg
agaaataagtatggctctgtggagcctcaggaaaaatgtgctgcttgtgacttcccactt
ctaaaccgccctttttaccttttcctgtgtggtcacatgtttcactatgactgtctcctc
caagcggtgttcccaaaccttcctgcctataaacaggcaaaacttgaagatcttcagaag
aagctggcagctaccagtcagccttccaagagccaccaccgtcccaaggacacagatacc
attagcttggggaaggggcagcagagccgggaacagatcaaagctgacattgatgatatt
gtggcagctgaatgtgtgtactgtggggagctgatgatccggtcaattgacaagcctttt
attgatccccaaaagtatgaagaggagatgcagagctggctgtag
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integrated database retrieval system
