Psittacula echo (Mauritius parakeet): 308223719
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Entry
308223719 CDS
T12082
Symbol
ATG16L1
Name
(RefSeq) autophagy-related protein 16-1 isoform 1
KO
K17890
autophagy-related protein 16-1
Organism
pech Psittacula echo (Mauritius parakeet)
Pathway
pech04136
Autophagy - other
pech04140
Autophagy - animal
pech04145
Phagocytosis
pech04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
pech00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
308223719 (ATG16L1)
04140 Autophagy - animal
308223719 (ATG16L1)
04136 Autophagy - other
308223719 (ATG16L1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
308223719 (ATG16L1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pech04131
]
308223719 (ATG16L1)
03029 Mitochondrial biogenesis [BR:
pech03029
]
308223719 (ATG16L1)
Membrane trafficking [BR:
pech04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
308223719 (ATG16L1)
Others
Specific organelles associated proteins
Auto phagosome
308223719 (ATG16L1)
Mitochondrial biogenesis [BR:
pech03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
308223719 (ATG16L1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
ATG16
WD40
Beta-prop_THOC3
Beta-prop_IFT122_1st
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
WDR55
WD40_Gbeta
Beta-prop_WDR3_2nd
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
DSE1_N
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_SCAP
Beta-prop_WDR75_1st
Beta-prop_Aladin
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_DCAF4
WDR90_beta-prop_4th
Beta-prop_WDR90_POC16_2nd
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_EIPR1
Beta-prop_NOL10_N
Beta-prop_VPS8
CFAP251_N
NBCH_WD40
WD40_RFWD3
Beta-prop_IFT140_1st
Beta-prop_ACSF4
Beta-prop_HPS5
Beta-prop_DCAF12
Beta-prop_NWD2_C
Ge1_WD40
Beta-prop_Vps41
ASA1
ZapB
INO80F
Fez1
HEF_HK
Nucleo_P87
Tricorn_N
HTH_6
DUF8181
AP5B1_middle
CCDC93_CC
CC_Bre1
YicC-like_N
FKBP15
V_ATPase_I
FUSC
CLIP1
Motif
Other DBs
NCBI-GeneID:
308223719
NCBI-ProteinID:
XP_080479258
LinkDB
All DBs
Position
7:complement(49566233..49588034)
Genome browser
AA seq
608 aa
AA seq
DB search
MASGLRAAGFPPWKRHIAAELRRRDRLQRQAFEEIIGQYNKLLEKSDLHAVLADKLQAEK
YDMQSRHEISPGHDGTWNDAQLQELAQLKIKHQEELTELHKKRGELAQSVIDLNNQMQQK
DKEMQMNEAKIAEYLQKISELETECQELRSKLQDLERANQTLKDEYDALQITFNALEEKL
RKTTEDNQELVSRWMAEKAQEANRLNAENEKDSRRRQARLQKELAEAAKEPLPVEPRDDD
IEVLADETSDTAEETSPVRTGSRTASKRLSQPAGGLLDSITNIFGRRSLSSFPAPQDSIE
PHPGASKEVRVPTTAICVFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVLGDRCEPK
GSLSGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDNRLRHTLTGHSGKVLSAKFLLD
NARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRTE
TIVKELELLGRITALDLNSERTELLTCSRDDLLKIIDLRVSAVKQTFSAQGFKCGSDWTR
VVFSPDGNYVAAGSADGALYIWSVLTGKLERTLTKHHSSPINAVAWSPAGAHVVSVDKGN
KAVLWSEF
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcggggctgcgcgccgccggtttccccccttggaagcggcacatcgcggcggag
ctgcggcggagggaccggctgcagcggcaggccttcgaggagatcatcgggcagtataac
aagctactagagaagtcagaccttcatgcggtgctggctgataagcttcaagcagaaaaa
tatgacatgcagagcagacatgagatcagtccaggacatgatggcacatggaatgatgcg
cagttgcaggagctggcacagctgaagataaagcatcaagaggagctgacagagctgcat
aagaaacgtggagagttggcccagtctgtaattgatctgaataaccaaatgcagcagaag
gacaaagagatgcagatgaatgaagcaaagattgcagagtatttgcaaaagatctctgaa
ctggaaacagagtgccaggaattgcgtagcaaactgcaagatcttgagcgagctaatcag
acactgaaggatgaatatgatgctctccagatcaccttcaatgccttggaggagaaactg
aggaaaactactgaagacaaccaggagttggtctcgcgttggatggcagagaaagcacaa
gaagcaaatcgtttgaatgcagaaaatgaaaaggattcaaggagacgacaagccaggctg
cagaaggaactagcagaagctgccaaagagcccctgcctgttgaacccagggatgatgat
atcgaagtgcttgcagatgaaacctctgacacagctgaggagacatctccagtgcgaact
ggcagccgaacagccagtaagcgactctcccagccagctggaggccttctggactctatc
actaatatctttgggagacgttctttgtcctcattccctgctcctcaggacagcatagag
ccacatccaggtgccagtaaagaagtgagagtgcccactactgccatatgtgtctttgat
gcacatgatggagaggtgaatgcagtgcagttcagccctggctcccggttactagcaaca
ggaggcatggaccggagggttaagctttgggaagtcttgggagacaggtgtgagcccaaa
ggttccctttctggtagtaacgctgggattacaagcatagaatttgatagtgctggttct
tacctcttagcagcttcaaatgactttgccagcagaatctggacagttgatgacaatcgg
ttacggcacaccctgacaggtcacagtggcaaagttctgtcagccaagttcttgctggac
aatgcacgcattgtttcaggaagtcatgaccggaccctcaagctctgggacctccgcagc
aaagtttgtataaaaacagtgtttgcaggatctagctgcaatgacatcgtatgtactgag
caatgtgtaatgagtggacattttgataagaaaatacgtttctgggacatcaggactgaa
accatagtaaaagagctggagctgcttggaagaatcacagctctggacctgaactcagag
cgaacagagcttttgacctgttcccgtgatgatctgctaaagatcattgacctacgggtt
agtgctgtcaaacagacattcagtgcccagggattcaaatgtggctctgactggacaaga
gttgtgttcagccctgacggtaactatgtggctgctggttcagctgatggggccctttac
atctggagtgtgctcactgggaaattggagaggacactaacaaagcatcacagttctcct
atcaatgcagtcgcatggtcaccagcgggtgcccatgtggtcagtgtggacaaaggaaac
aaggctgtcctgtggtctgaattctga
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