Psittacula echo (Mauritius parakeet): 308227869
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Entry
308227869 CDS
T12082
Symbol
TNC
Name
(RefSeq) tenascin
KO
K06252
tenascin
Organism
pech Psittacula echo (Mauritius parakeet)
Pathway
pech04510
Focal adhesion
pech04512
ECM-receptor interaction
pech04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
pech00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
308227869 (TNC)
04518 Integrin signaling
308227869 (TNC)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
308227869 (TNC)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pech00536
]
308227869 (TNC)
Glycosaminoglycan binding proteins [BR:
pech00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
308227869 (TNC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EGF_TEN
fn3
Fibrinogen_C
EGF_Teneurin
EGF_2
EGF_Tenascin
Fn3_PBP1
FN3_DSCAM-DSCAML_C
Fn3_Dep-1_2nd
Fn3_Dep-1_3rd
DUF7949
Pur_ac_phosph_N
Fn3_VIN3
EGF
EGF_PEAR1L
Interfer-bind
NDNF
Fn3_ROS1
hEGF
DUF4998
EGF_TGFA-like
SPE9_EGF_3rd
Motif
Other DBs
NCBI-GeneID:
308227869
NCBI-ProteinID:
XP_080486890
LinkDB
All DBs
Position
16:<8918973..>8966293
Genome browser
AA seq
1807 aa
AA seq
DB search
MGLPTQVLACAILALLYQHVSGGLIKRIIRQKRETGLNVTLPEDNQPVVFNHVYNIKLPV
GSLCSVDLDAASGDADLKAEIEPVKNYEEHTVNEENQIVFTHRINIPRRACGCAAAPDIK
DLLSRLEELEGLVSSLREQCASGAGCCPNSQAVEGRLDTTPYCSGHGNYSIEICGCVCEP
GWKGPNCSEPACPHNCFNQGLCVQGRCICNEGFTGEDCSQVSCPADCNDQGKCIDGVCVC
FEGYTGTDCSEELCSQGCSVHGRCVNGQCVCHEGFTGDDCSEPLCPNNCHNHGRCVDNEC
VCDEGYTGEDCSELICPNDCFDRGHCVNGTCFCEEGFTGEDCGELTCPNNCNGNGRCENG
LCVCYEGFVGDDCSEKRCPNDCHNRGRCINGRCVCHEGYLGEDCGELRCPNDCHNRGRCV
NGQCVCNEGFIGEDCGELRCPNDCNNRGRCINGQCVCHEGFIGEDCGQLRCPNDCHKRGL
CVNGQCVCDEGYTGEDCGELRCPEDCHNRGRCVEGRCECDNGFTGEDCGELSCPNDCHQR
GRCINGRCVCHEGFRGEDCREQSCPNDCNNVGRCVDGRCVCEDGYMVDDCSDVSPPTELT
VTDVTDKTVNLEWRHENVVNEYLVTYVPTGSGGLDMQFTVPGNQTAATIHELEPGVEYFI
RVFAILKNKKSIPVSARVATYLPAPEGLKFKSVRETSVQVEWDPLNFSFDGWELVFRNMK
KDDNGDITSSLKRPETSYMQPGLAPGQQYNVSLHIVKNNTRGPGLSKVITTKLDAPSQIE
AKDVTDTTALITWSKPLAEIEGIELTYGPKDIPGDRTTIDLSEDENQYSIGNLRPHTEYE
VTLISRRGDMESDPMKEVFVTDLDAPKNLKRVSQTDSSITLEWKNSHANIDNYRIKFAPI
SGGDHAEITVPKGNQATTRATLTGLRPGTEYGIGVTAVRQDRESAPATINAGTDLDNPKD
LEVSDPTETTLSLRWRRPVAKFDHYRLISVNPSGKKSEVEIPVDSTSFILRGLDAGTEYT
ISLVAEKGRHKSKPTTVKGSTEEEPELGKLSVSETGWDGFQLTWTAADGAYESFIIQVQE
SENPEETRNITVPGGLRFMNVTGLKANTPYNVTLHSVIRGYRTKPLSVETMTGVHPEVGE
LTVSDITPESFNLSWTTTHGDFDIFTIEIIDSNRLLEPMELNISGNSRTAHISGLSPSTD
FIVYLYGISHDFRTQAISAAATTEAEPEVDNLLVSDATPDGFRLSWTADDGVFTSFVLKI
RDTKRKSDPLELIVPGHERTQDITGLKEGTEYEIELYGFSSGRRSQPINAVATTVVGSPK
GISFSDITENSATVSWTPPRTRVESYRISYVPLTGGTPNVVTVDGSKTRTKLVKLVPGVD
YNVSIISVKGFEESEPISGILKTALDSPSGLIVVNITDSEALATWQPAIAAVDNYIVSYA
SEDEPEVTQMVSGNTVEYDLKGLQPATEYTLSVHALKDTQKSETLSTQFTTGLDAPRDLS
TTEVQSETAVITWRPPRAPVTGYLLIYESIDGRVKEVILNPETTSYSLTELSPSTQYTVR
LQALNGSLKSKTIQTIFTTTGLLYPYPKDCSQALLNGETTSGLYTIYLNGDKAQPLQVFC
DMGEDGGGWIVFLRRQNGKEDFYRNWKTYVAGFGDPKDEFWIGLENLHKITSQGQYELRV
DLQDKGETAYAVYDRFSVGDSKTRYRLRVDGYSGTAGDSMTYHNGRSFSTFDKDNDSAIT
NCALSYKGAFWYKNCHRVNLMGRYGDNSHSQGVNWFHWKGHEYSIQFAEMKLRPSSFRNL
EGRRKRA
NT seq
5424 nt
NT seq
+upstream
nt +downstream
nt
atgggactccccacccaggttttagcctgtgcgattttggctttgctctaccagcatgtc
agtggtggactcatcaagcgaattatccggcagaagcgggagactgggctaaatgtgacc
ttgccagaggataatcagcctgtggtttttaaccacgtctacaacattaagttgcctgtt
ggctccctttgctctgtggacctggatgcagcgagtggtgatgcagacctgaaggcggaa
attgagcccgtcaagaattacgaggagcacacggtgaatgaggagaaccagattgtcttc
acacaccggattaacattccccgccgagcctgcggctgtgcagctgccccagacattaag
gatctgctgagcagactcgaggagctggaggggctggtatcctccctacgagagcagtgt
gccagcggggctggatgttgtcccaattcccaggcagtagaaggtcgcctggacacaaca
ccgtattgcagtggacacggcaactacagcattgagatctgtggctgcgtttgtgagcct
ggctggaaaggtcctaactgctctgaaccagcctgtccacacaactgcttcaaccagggc
ctctgcgtccagggcagatgcatctgcaatgaaggcttcacgggtgaggactgcagccag
gtctcctgcccggccgactgtaacgaccaaggcaagtgcatcgatggcgtttgtgtgtgc
tttgaggggtacacaggcacagactgcagcgaagagctctgctcccaggggtgcagtgtg
catgggaggtgcgtgaacgggcaatgcgtgtgccacgagggcttcacaggcgatgactgc
agtgagcccctctgccccaacaactgtcacaaccacgggcgctgtgtggataatgaatgc
gtctgtgatgagggttacaccggtgaggactgcagcgagctcatctgccccaacgactgc
ttcgaccgcgggcactgtgtcaatgggacctgcttctgtgaagagggcttcaccggggag
gactgcggcgagctgacctgccccaacaactgcaacggcaatgggcgctgtgagaacggg
ctgtgtgtctgctatgagggcttcgtgggggacgactgcagcgagaagaggtgtcccaac
gactgccacaaccgcgggcgctgcatcaacgggcgctgtgtgtgccatgaggggtacctg
ggtgaggactgcggcgagctgcggtgtcccaacgactgtcacaaccgcgggcgctgcgtc
aatgggcagtgtgtgtgcaatgaagggttcattggggaggactgcggtgagctgcgatgc
cccaatgactgcaacaaccgcgggcgctgcatcaatgggcagtgtgtgtgccatgaaggg
ttcattggggaggactgtggccagctgaggtgccccaacgactgccacaaacgtggtctc
tgtgtcaatgggcagtgtgtgtgtgatgaagggtacacaggggaggactgcggggagctg
cgttgccctgaggactgccacaaccgtggacgctgcgtggagggccgctgtgagtgtgac
aatggcttcacaggggaggactgtggcgagctgtcctgccccaatgactgccaccagcgc
gggcgctgcatcaatgggcgctgcgtgtgccatgagggcttcaggggggaggactgccga
gaacagtcctgccccaatgactgcaacaatgtgggccgctgcgtcgatggacggtgtgtc
tgtgaggatggttacatggtggatgactgctccgacgtgtctcctccaactgagctgact
gtgacagacgtaacagataaaaccgtcaatctggaatggaggcatgagaatgttgtcaat
gagtacctcgtcacctatgtccctactggcagtggtggcttagatatgcagttcactgtg
ccaggaaaccagacagctgccacaattcatgaactggagccgggtgtggaatactttatc
cgtgtctttgcaatccttaaaaacaagaagagtattccagtcagtgccagggtagcaacg
tatctgcctgctccagaaggtctgaaattcaagtctgttagagaaacatccgtccaggtg
gagtgggatcctctaaacttctcatttgatggctgggagctggtcttccgtaatatgaaa
aaggatgataatggagatataaccagcagcttgaaaaggccagagacatcttatatgcag
ccaggtttggcaccaggacaacagtataatgtgtcccttcatatagtgaaaaacaatacc
aggggaccaggactatccaaagtgataaccacaaagcttgatgcccctagccagatcgag
gcaaaagatgtcacagacaccacagctcttatcacgtggtccaaacctttggctgaaatt
gaaggtatagagctcacttatggccccaaagatattccaggggacaggacaaccattgac
ctctctgaagatgaaaaccaatattccattggaaacctgaggccacacacagagtatgaa
gtgacgctcatctctcgtcgaggggacatggaaagcgatcccatgaaagaagtctttgtc
acagatttggatgctccaaaaaacctgaagcgggtgtcacagacagacagtagcattact
ttggagtggaagaacagccatgcaaatattgataactaccgcatcaagtttgctcccatc
tctggtggagaccatgccgagatcacagtgccaaagggcaaccaagcaacaaccagagcc
acactcacagggttgaggcctggaactgaatatggcattggtgtgacagcagtgagacag
gacagggaaagtgctcctgctactattaatgctggcactgatcttgataaccccaaggac
ttggaagtcagtgaccccactgaaaccaccttatcccttcgctggagaagaccagtggcc
aagtttgatcactatcgccttatttctgttaacccctctggaaagaagagtgaagtggag
atccccgtggacagcacctctttcatcctgcgagggttggatgcagggacagaatacacc
atcagtctggtggcggagaaaggcagacacaaaagcaaacccacaaccgttaagggttct
actgaggaggaacctgagcttggaaaactatcagtatcagagactggctgggatggtttc
cagctcacctggaccgcagctgacggggcgtatgagagctttatcattcaggtgcaggag
tctgagaatcctgaagaaacccggaatatcacagtcccaggcggactgcgctttatgaat
gtcacaggcctcaaggccaacacaccttataacgtcacacttcacagtgtgattcgaggc
tacaggaccaaacccctttctgttgaaaccatgacaggagtgcacccagaagttggtgag
ctaacagtttccgacattactcctgaaagcttcaacctttcctggacaaccacccatggg
gacttcgacatctttactattgaaattattgattctaacaggttgctggagcccatggag
ctgaacatctcaggcaactcaagaactgctcatatctcagggctttcccccagcactgat
tttattgtctacctctatgggatctctcatgatttccgcacacaggcaataagtgctgca
gctacaacagaagcagaacccgaggtcgacaaccttctggtttcagatgctactccagat
ggcttccgtctgtcctggactgcagatgatggggttttcaccagttttgttctcaaaatc
agggataccaaaaggaaatctgatccactggaactaatagtaccaggccatgagcgcacc
caggatataacagggctgaaagagggtactgaatatgagattgagctgtatggatttagc
agtggacgacgttcccaacccataaatgcagtagcaaccacagttgttggatctcccaag
ggaatttctttctctgacatcacggaaaactctgctacagtcagctggacaccccctcgc
acccgcgtggagagctaccgcatctcctatgtccctctcacaggaggtactccaaatgtt
gttacagttgatggaagcaagacaaggaccaaattggtgaagttggtcccaggtgtagac
tacaatgttagtatcatctctgtgaaaggctttgaagagagtgaacccatctctggcatt
ctgaaaacagctctggacagcccatcaggcctaatagtggtgaacatcacagactctgag
gctctggcaacctggcagccagcaattgctgctgtggataattacattgtctcctatgct
tctgaggatgaacccgaagttactcagatggtatcaggaaacacggtggagtacgacctg
aagggccttcaacctgcaactgagtatactctgagtgtccatgcgctgaaggacacacag
aagagtgagaccctctccacccagtttactacaggactggatgctccaagagatttaagt
actactgaagttcagtcagaaacagctgtgataacttggaggcctccacgtgctcctgtc
actggttatctcctgatctacgagtccattgatggcagagtcaaggaagtcatcctaaac
cctgagactacttcctacagcctgacagagctgagcccatctacccagtacacagtgaga
ctccaggctctgaatggatccctgaagagcaaaacgatccagacaattttcaccacaact
ggtcttctctatccttaccctaaagactgctcccaggctctcctgaatggagaaaccacc
tctgggctctacacgatttacctgaatggggacaaggctcagcctctgcaagtcttctgt
gacatgggcgaggatggcggtggatggatcgtgttcctgaggcgtcaaaatggaaaggaa
gatttctacaggaactggaagacttacgtggctggttttggagaccctaaggatgaattc
tggataggtctggagaacctccacaaaatcacttctcagggccagtatgagctgcgtgtg
gatctgcaggacaaaggtgagacagcttatgctgtctacgacaggttcagcgttggagac
tccaagaccagataccgcttaagagtggatggttacagtggcacagcaggtgactccatg
acgtaccataatgggaggtccttctccacttttgacaaggacaatgattctgccatcacc
aactgtgctttgtcatacaagggggcattctggtacaagaattgtcaccgagtcaatctg
atgggcagatatggtgacaacagccacagtcagggtgttaactggttccactggaagggc
cacgaatattccatccagtttgcagagatgaagctgagaccctccagcttccggaacctg
gaaggaaggagaaagagagcgtaa
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