Psittacula echo (Mauritius parakeet): 308229288
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Entry
308229288 CDS
T12082
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
pech
Psittacula echo (Mauritius parakeet)
Pathway
pech03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pech00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
308229288 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pech03041
]
308229288 (DDX42)
Enzymes [BR:
pech01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
308229288 (DDX42)
Spliceosome [BR:
pech03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
308229288 (DDX42)
Complex B
308229288 (DDX42)
Complex C
U2 SnRNP specific factors
308229288 (DDX42)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
308229288
NCBI-ProteinID:
XP_080489353
LinkDB
All DBs
Position
23:648387..665429
Genome browser
AA seq
1041 aa
AA seq
DB search
MHTCGQRREHPQPRSGGTTCSAAPPARLRDYSAARLRALPVPPPTSRGFLRCHRACSVAC
ALTSARHARTDVVTSRLPPPLLPPAPVTGEAAAAVPEGYTGDIMNWNKGGPGTKRGFGFG
GFAITPGKKEEPKLSQQSHSAFGTAGSSAAFAKSGPPQLPSFYKIGSKRANFDEENAYFE
DEEEDSSNVDLPYIPAENSPTRQQFHSKSADSDSDDDPLEAFMAEVEDQAARDMKRLEDK
DKEKKNAKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDNLEYDSDGNPIAPSKKII
DPLPPIDHSEIEYPPFEKNFYDEHEEITSLTPQQVIELRHKLNLRVSGAAPPRPGSSFAH
FGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMD
QKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGA
EIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIANHVRPDRQTLLF
SATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPSGPSKWNWLTRRLVEFTS
SGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPILVATDV
AARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNL
EGANQHVSKELLDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGYRERPGLGSENSDRGNNN
SVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLNNQKTGSSAAGASGWTSAGS
LNSVPTSSAQQNTANPESPLAATAAAKGVPGFTSTGSLSTVPTFPSVGGQGFNSTSASTN
SREGGGGGAGVAAAGGGGGGVVRERYNDSRPGRHNEAPRRGDGGGRYNDVQRHGDGGGRH
SDVYRHGESRHGDNHRHGESRHFTDAGGGNRNNGDSRNSSEGRSNESRNGDNRKEATNRD
NKTDGFAVPEPPKRKKSRWDS
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atgcacacgtgtggacagcgccgggaacaccctcagccccgcagcggcggcacaacctgt
tccgcagcaccccctgcgcggctccgggactactccgcggcgcggctccgggcgctcccg
gttcctccgcccacctcccgcggcttcctccgctgccaccgcgcatgttccgtggcgtgc
gcgctgacctcagcgcgccacgcacgtaccgacgttgtaacgtcgcgtctccctcccccc
cttcttccccccgccccggtaaccggggaagcggcggctgcggtgcccgagggatacact
ggggacatcatgaattggaacaaaggtggacctggaactaagagaggctttgggtttggt
ggctttgccataacacctgggaagaaggaggagccgaagctctcgcagcagtctcacagt
gcttttggaacagccggttcttctgctgcatttgcaaaatcaggacctcctcagctgcct
tctttctacaaaattgggtcaaagcgagcaaattttgatgaagagaatgcgtactttgag
gatgaagaggaagattccagcaatgtcgatttgccatacattcctgcagagaattccccc
actcgccagcagtttcattccaaatcagcagattctgacagcgatgatgatcctctggag
gcattcatggctgaagtggaggatcaagctgctcgagacatgaagagactcgaagataaa
gacaaggaaaaaaagaatgctaagggtattcgagatgacattgaagaagaagatgaccaa
gaagcttattttcgctatatggctgaaaaccccactgctggtgtggtccaagaagaggaa
gaggataacctggagtatgatagtgatgggaatccaattgcaccgtccaaaaaaatcatt
gaccctcttccacctattgaccactcagagattgaatatccaccatttgagaagaatttc
tatgatgagcatgaggagatcacaagtctcacgccacagcaagtgatagagctacgtcat
aagctaaatctccgggtctccggtgctgctcctccgaggcctggcagtagttttgctcat
tttgggtttgatgagcagcttatgcatcaaattaggaaatctgagtatacccagcccact
cctatacaatgtcagggtgttccagttgcactaagtggcagagatatgattgggatagct
aaaactggaagtggaaaaacagcagccttcatctggccaatgctgattcatatcatggat
caaaaggagcttgagccgggggatggtcccattgcagtcattgtctgcccgaccagagag
ctttgccaacagatccactcggaatgtaagcgctttggtaaggcgtataatctgcgctct
gtagctgtgtatggaggaggaagcatgtgggagcaagccaaagccctccaggagggggca
gagatagttgtctgcacaccaggtcgtctgattgatcatgtgaaaaagaaagctacaaac
cttcaaagagtcacttaccttgtgtttgatgaagctgacagaatgtttgatatggggttt
gaatatcaggtcagatccatcgcaaaccatgtccgtcctgacagacagaccctcttgttc
agtgccactttccgtaagaagattgagaaattggcccgggatattctgatcgaccccatc
cgagttgtgcagggagacattggagaggcaaatgaagatgttactcaaattgtggagatt
ttcccctctggcccgagcaagtggaactggctgactcgacgcctcgtggagttcacctct
tctggcagtgttctgctgtttgtcaccaagaaagcaaatgcagaagagttggccaataac
ctcaagcaggaggatcataatctggggctgcttcatggtgacatggaccagagtgagagg
aataaagtcatttcagaatttaagaagaaggggatcccgatactggtagctactgatgtg
gcagctcgtgggttagatattccttccattaagactgtcatcaactacgacgtggctcga
gacatagatactcacacccatcggatcggtcgtaccggcagagcgggcgaaaagggagtt
gcctacactcttctgactcccaaagacagtaacttcgctggtgatcttgtcaggaacctg
gaaggggctaatcagcatgtttccaaagaactgctggatctagcaatgcagaatccatgg
ttccgaaaatcacgtttcaaaggaggaaaaggcaagaagctgaatattggtggcggtggc
ttagggtaccgtgaacgtcctggtctgggatcagaaaactctgaccgtggaaacaacaac
agcgtgatgagtaactacgaggcatacaagccatccactggggcaatgggagacaggctt
acggcaatgaaagcagcttttcagtcccagtacaagagccactttgttgctgcaagctta
aacaatcaaaagactggtagctctgctgctggggcaagtggctggaccagcgccgggagc
ttgaactcggtaccgacgagttcagcccagcaaaacactgcaaaccctgagagcccactt
gcagccaccgcagcagcaaagggtgtgccaggcttcaccagcacggggagtttgagtacc
gttcccaccttcccaagtgtcggaggacagggcttcaacagcacaagtgccagcaccaac
agtcgagagggcggcggcggcggcgccggtgttgccgccgctggtggtggtggtggcggc
gtggtcagggaacgatacaacgacagccggcccggtcggcacaacgaggccccgcgccgt
ggcgacggaggtggtcgctacaacgacgtgcagcgccacggggatggaggtggtcgccac
agtgacgtttaccgccacggagagagccgccacggcgacaaccatcgccacggggagagc
cggcacttcactgatgcgggcggtgggaaccgcaataacggtgacagcaggaacagcagc
gaagggaggagcaacgagagcaggaatggtgacaacaggaaggaggccaccaaccgagac
aacaaaacagatgggtttgctgtcccagagcccccaaagcggaagaagagccggtgggac
agttaa
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integrated database retrieval system
