Psittacula echo (Mauritius parakeet): 308230624
Help
Entry
308230624 CDS
T12082
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain
KO
K19719
collagen type II alpha
Organism
pech Psittacula echo (Mauritius parakeet)
Pathway
pech04510
Focal adhesion
pech04512
ECM-receptor interaction
pech04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
pech00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
308230624 (COL2A1)
04518 Integrin signaling
308230624 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
308230624 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pech00536
]
308230624 (COL2A1)
Glycosaminoglycan binding proteins [BR:
pech00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
308230624 (COL2A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
308230624
NCBI-ProteinID:
XP_080491547
LinkDB
All DBs
Position
27:<2894496..>2912968
Genome browser
AA seq
1486 aa
AA seq
DB search
MPGRRPLRLAAALAILLLAVVAAQDRDLPEAGSCLQDGQSYSDKDVWKPEPCRICVCDTG
TVLCDDIICEELRDCPSPEIPFGECCPICPAEQPSGWQPGPKGQKGEPGDIKDVVGPRGP
PGPQGPAGEQGQRGDRGEKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAA
QMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGEPGEPGAAGPMGP
RGPPGPPGKPGDDGETGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGE
AGAPGAKGESGSPGENGSPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPPGPVGP
AGAPGFPGAPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPSGAPGNPGTDGIPGAKGS
AGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGETGPAGPQGA
PGPAGEEGKRGARGEPGAAGPVGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPAGLAGP
KGATGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPTGAPGEDGRPGPPGPQGARGQPGV
MGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGP
SGFQGLPGPPGPPGESGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGL
PGTPGTDGPKGATGPAGPNGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGK
DGARGLTGPIGPPGPAGPNGEKGESGPPGPSGAAGARGAPGERGEPGAPGPAGFAGPPGA
DGQPGAKGEQGEPGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGA
AGRVGPPGPNGNPGPPGPPGSAGKDGPKGARGDAGPPGRAGDPGLQGPAGPPGEKGEPGE
DGPAGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGSAGDRGPPGP
VGPPGLTGPAGEPGREGNPGSDGPPGRDGAAGVKGDRGETGPVGAPGAPGAPGAPGPVGP
TGKQGDRGETGAQGPMGPSGPAGARGMPGPQGPRGDKGETGEAGERGLKGHRGFTGLQGL
PGPPGPSGDQGAAGPAGPSGPRGPPGPVGPSGKDGSNGMPGPIGPPGPRGRSGEPGPAGP
PGNPGPPGPPGPPGTGIDMSAFAGLGQTEKGPDPIRYMRADEAGSSLRQHDVEVDATLKA
LNNQIESIRSPEGSKKNPARTCRDIKLCHPEWKSGDYWIDPNQGCTLDAIKVFCNMETGE
TCVYPNPRSIPKKNWWTSKTKDKKHVWFAETINGGFHFSYGDEDLAPNTANIQMTFLRLL
STEGSQNVTYHCKNSIAYMDEETGNLKKAILIQGSNDVEIRAEGNSRFTYSVLEDGCTKH
TGKWGKTVIEYRSQKTSRLPIVDIAPMDIGGAEQEFGVDIGPVCFL
NT seq
4461 nt
NT seq
+upstream
nt +downstream
nt
atgcccggccgccgcccgctccgcctcgccgccgccctcgccatcctcctcctcgccgtt
gtcgccgcgcaggaccgagacctccccgaagcaggcagctgcctgcaggacgggcagagc
tatagcgataaggacgtgtggaagccggagccgtgccgtatctgcgtgtgcgacacgggg
accgtcctctgcgacgacatcatctgcgaggagctgcgggactgccccagccccgaaatc
cccttcggagagtgctgccccatatgtcccgctgagcagcccagcggttggcaacctggc
cccaaggggcagaagggtgaacccggtgacattaaagatgttgtaggaccccgagggcct
ccgggaccgcagggccctgcaggtgagcagggacagcgaggggaccgtggcgagaagggg
gagaagggtgctcccggtccccggggcagggatggagaacccggcacccctgggaatccc
ggcccccccggtccccccggccctcccggtccccccggcctcggtgggaacttcgcggct
cagatggccggaggctttgatgagaaggctggaggcgcacagatgggcgtcatgcagggg
cccatgggccccatgggaccccgtggcccccccggcccttccggtgctcctggtccccaa
ggcttccaaggcaaccccggcgagcccggcgagcccggcgctgctggtccgatgggtccc
cgcggacccccgggaccccccgggaagcccggcgatgatggtgagaccggcaaacccggc
aagtccggagagcgcggcccccccggcccccagggtgctcgaggcttccccgggacccct
gggctgcccggagtgaaaggacaccgggggtaccccggcttggacggtgccaaaggagag
gcaggagctcctggagctaagggtgaatccggctcccctggcgagaacggctcccccggc
cccatgggtccccgtgggctgcctggagagagaggacgacccggcccctctggcgctgcg
ggtgctcgtggcaatgacggcctccccggcccggcgggacccccgggacctgtgggtcca
gccggagcccccggcttccccggcgcccccggctccaagggtgaagctggtcccaccgga
gcacgagggcctgagggtgcccagggcccccgcggtgaatccggtacccccggctctccc
ggcccctccggtgcccctgggaaccccgggactgacggcattcccggcgcgaagggctct
gcgggtgctcccggcatcgcgggtgctccaggcttccccggcccccgcggcccacccgga
ccccagggcgccaccggcccgctgggacccaagggacagacgggtgaacccggcatcgca
ggcttcaaaggcgagcagggacccaagggcgagacgggccccgcaggaccgcagggagcc
cccgggccggcgggtgaggaaggcaagaggggagcccgcggtgaacccggcgctgccggt
cccgtggggccacccggagagaggggcgctcccggcaaccgcggcttcccggggcaggac
gggctggctggacccaagggtgctccgggcgagcgcggccccgccggcctcgcggggccc
aaaggagccaccggtgaccccgggcgccccggagagcccggcctgcccggagccaggggt
ctcaccggccgcccaggagatgctggtcctcaaggcaaagtcggccccactggtgccccc
ggcgaggacggacgccccggcccccccggcccccagggtgctcgtggccagcccggtgtg
atgggtttccctggtcccaaaggtgctaatggcgagcctggaaaagccggtgagaaaggg
ctccccggcgccccggggctgcgggggcttcctggcaaggacggtgagactggagccgcc
ggccccccaggacctgctggtcctgcgggagagaggggagagcaaggagcccctggtccc
tccggcttccaggggctgcccgggccaccaggtccccccggagagagcggcaaacccgga
gatcagggtgttcctggggaagctggtgcccccggtctcgtcggtcccagaggtgaacgt
ggcttccccggtgaacgcggctctcccggtgcacaagggctgcagggtccccgcgggctc
cctggcacaccgggcaccgacggacccaagggtgcaaccggccccgccggccccaacggt
gcccagggtcccccggggctgcaggggatgcccggggagcgaggagcagccgggatcgcc
ggtcccaagggagatcggggagatgttggagagaagggacccgagggagctcctgggaag
gacggcgcacgcggtctcacgggtcccatcggtccccccggccccgctggccccaatggc
gagaagggagaatccggtccccccggtccctctggtgctgccggtgcccgcggtgcccct
ggcgagcgcggggagcccggtgcccccggtcccgctggattcgccgggcccccgggcgcc
gatggacaacccggagccaaaggggagcagggagagcccggccagaagggagacgctgga
gctcccggtccccagggtccctccggcgctccgggcccgcagggccccacgggtgtcact
ggtcccaaaggagcgcgcggagctcagggccccccgggagcaaccggattcccgggtgcc
gccggtcgagtgggacctcccggcccgaacggtaacccgggcccccccggcccccccggc
tccgctggcaaggacggacccaagggtgctcgcggcgacgcggggccccccggccgcgcc
ggtgaccccgggctccagggccccgccggtccccccggggagaagggcgagcccggcgag
gacggccccgcgggtcccgacggcccccccgggccccaaggcttggcaggacaacgcggc
atcgtcgggctcccgggacagcgaggggagaggggcttccccgggctgccggggccgtcg
ggtgaacctggaaagcaaggagctcccggctccgccggtgaccgcggcccccccggcccc
gtgggtccccccggtctgacgggtcctgctggtgaacctggccgcgagggcaaccccggc
tccgatggcccccccggccgagacggcgcggccggtgtgaagggtgaccgcggcgagacc
ggccccgtgggtgctcccggtgctcccggcgctcccggcgctcccggccccgtgggtccc
actggcaaacagggagacagaggcgagacgggcgcacaaggtcccatgggtccctccggc
cctgctggtgctcgaggcatgccgggtccccaagggcctcgcggtgacaagggggagaca
ggagaggctggagagagggggctgaagggccaccgtggcttcaccggcctgcagggtctt
cctggaccacccggtccctctggagaccaaggtgctgctggtcctgcaggtccctccggc
cccaggggtccccccggccccgttggtccctctggcaaggacggctccaatgggatgccc
ggccccatcggtccccccggcccccgtggccgaagcggcgaaccaggacctgcgggtccc
cctggaaaccccggtccccccggtcctcctggccccccgggcaccggcattgacatgtca
gccttcgccgggctgggtcagacggagaagggccccgaccccatccggtacatgcgggcg
gacgaggcgggcagcagcctgcggcagcatgacgtcgaggtggacgccacgctcaaggcc
ctcaacaaccagatcgagagcatccgcagccccgagggctccaagaagaacccagccagg
acctgccgggacatcaagctttgccatcccgagtggaagagcggagattactggatcgac
ccgaaccaaggctgcaccttggatgccatcaaagtcttctgcaacatggagacaggtgag
acctgtgtctaccccaaccccagaagcatccccaagaagaactggtggaccagcaagacc
aaagacaagaagcacgtctggttcgcagagaccatcaatggtggtttccattttagctac
ggtgatgaagacctggctcccaacaccgccaacatccagatgaccttcctgcgcctcctg
tccaccgaaggctcccagaacgtcacgtaccactgcaagaacagcatcgcctacatggac
gaggagacgggcaacctgaagaaagccatcctcatccagggctccaacgacgtggagatc
agagccgagggcaacagcaggttcacgtatagcgtcctggaggacggctgcacgaaacac
actggcaaatggggcaagacagtgatcgagtaccggtcgcagaagacctcgcgcctgccc
attgtggatattgcacctatggacattggtggagcggagcaggagttcggtgtggatatc
ggccctgtctgcttcctgtaa
DBGET
integrated database retrieval system
