Psittacula echo (Mauritius parakeet): 308230691
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Entry
308230691 CDS
T12082
Symbol
SCN8A
Name
(RefSeq) sodium channel protein type 8 subunit alpha
KO
K04840
voltage-gated sodium channel type VIII alpha
Organism
pech Psittacula echo (Mauritius parakeet)
Pathway
pech04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
pech00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
308230691 (SCN8A)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pech04040
]
308230691 (SCN8A)
Ion channels [BR:
pech04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
308230691 (SCN8A)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
PKD_channel
IQ_SCN5A_C
ATP-synt_B
GPHH
IQ
FraC
HB_ELP1
Motif
Other DBs
NCBI-GeneID:
308230691
NCBI-ProteinID:
XP_080491678
LinkDB
All DBs
Position
27:complement(<1192491..1234147)
Genome browser
AA seq
1979 aa
AA seq
DB search
MAAKLLAPPGPESFKPFTPESLANIEKHIAELKKKQRSKQDSSHRDDDEDSKPKPNSDLE
AGKNLPFIYGDIPKGLVAVPLEDFDPYYMTQKTFVVLNRGKTLFRFSATPALYILSPFNL
FRRIAIKILIHSLFSMIIMCTILTNCVFMTFSNPPEWSKNVEYTFTGIYTFESLVKIIAR
GFCIDGFTFLRDPWNWLDFSVIMMAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTI
VGALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCVIWPINVNETFLDNGSRGF
DWEEYTNNVSNFYVIPGAPDPLLCGNSSDAGQCPEGYTCMKAGRNPNYGYTSFDTFSWAF
LALFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFVGSFYLVNLILAVVAMAYEEQNQA
TLEEAEQKEAEFKAMLEQLKKQQEEAQAAAMVTSAGTVSEDAVEDDGGGVRMSRSSSELS
KLSSKSAKERRNRRKKRKDKELSEGEEKCDTEKVFKSESEDGMRRKAFRLPDNRLGRKFS
IMNQSLLSIPGSPFLSRHNSKSSIFSYKGRFRDPGSENEFADDEHSTVEESEGRRDSLFI
PIRGRDRRSSYSGYSGYSQGSRSSRIFPNLRRSVKRNSTVDCNGVVSLIGGPPSSMPGGR
LLPEGTTEIEIRKKPGGSLLVSMDQVNASYGRKDRTNSVMTGLTNTLVEELEESQRKCPP
CWYKFANTFLIWECHPYWMKLKEIVNLIVMDPFVDLAITICIVLNTLFMAMEHHPMTPEF
EHVLSVGNLVFTGIFTAEMFLKLIAMDPYYYFQEGWNIFDGFIVSLSLMELGLADVEGLS
VLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSY
KECVCKINPECELPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAGQAMCLIVFMMVM
VIGNLVVLNLFLALLLSSFSADNLAATDDDGEMNNLQISVIRIKKGIAWIKAKVREFMQA
HFKQREADEVKPLDELYDKKVNCIANHTGADINRDIDYQKNGNGTTSGIGSSVEKYIIDE
DHMSFINNPNLTVRVPIAVGESDFENHNTEDFSSDTDPDGSKEKLDETSSSEGSTIDIKP
EVEEVPVEAPEEYLDPDACFTEGCTQRCKCCQVNIEEGLGKSWWTLRKTCFLIVEHNWFE
TFIIFMILLSSGALAFEDIYIEQRKTIRTILEYADKVFTYIFILEMLLKWCAYGFVKFFT
NAWCWLDFLIVAVSLVSLIANALGYSELGAIKSLRTLRALRPLRALSRFEGMRVVVNALV
GAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKYHYCFNETAEERFDIDIVNNKTDCEALMP
PNSTEIRWKNVKINFDNVGAGYLALLQVATFKGWMDIMYAAVDSRKQEEQPKYEDNIYMY
IYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQ
KPIPRPLNRIQGAVFDFVTQQAFDIVIMMLICLNMVTMMVETDTQSKQMEDILYWINLVF
VIFFTCECVLKMFALRHYYFTIGWNIFDFVVVILSIVGMFLAEIIEKYFVSPTLFRVIRL
ARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIFSIFGMSNFAYVKHEAG
IDDMFNFETFGNSMICLFQITTSAGWDGLLLPILNRPPDCDLDKEHPGSGFKGDCGNPSV
GIFFFVSYIIISFLIVVNMYIAIILENFSVATEESADPLSEDDFETFYEIWEKFDPDATQ
FIEYSKLADFADALEHPLRVPKPNTIELIAMDLPMVSGDRIHCLDILFAFTKRVLGDSGE
LDILRQQMEERFVASNPSKVSYEPITTTLRRKQEEVSAVVIQRAYRARLARRGFISRRPV
PTKLENGGANREKKEGTPSTASLPSYDSVTKPEKEKQQRAEEGRRERAKRPKDVRESKC
NT seq
5940 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgaagctgctcgcaccaccaggccccgagagcttcaaacccttcacgccggag
tctctggccaacatcgagaagcacatcgccgagctgaagaagaagcagcgctccaagcag
gacagcagccaccgggatgacgacgaagacagcaaacccaaacccaacagtgacctcgag
gcggggaagaacttgcctttcatctacggggacatcccaaaaggcctggttgctgtaccc
ctggaggactttgacccttattatatgacccagaaaacctttgtagtactaaacagaggg
aaaacactcttccgatttagtgccacacctgccttgtacattttaagtccttttaatctg
tttagaagaatagctattaaaattttgatacattcattatttagcatgatcattatgtgc
actattttgaccaactgtgtattcatgacttttagtaacccacccgaatggtccaagaat
gtggagtacacgttcactggcatttatacgtttgaatcccttgtgaagatcattgcgaga
gggttctgtatagacggctttactttcctgcgggacccatggaactggctggatttcagc
gtcatcatgatggcatatgtcacagagtttgtggacctggggaatgtctcagccttgaga
actttcagagttctccgagctttgaaaactatctctgttattccaggcttgaagaccatc
gtgggtgccctcatccagtctgtgaagaagctgtcggatgtcatgatcttgacggtgttt
tgtctcagtgtcttcgctctcatcggcctgcagctctttatgggcaatttgaggaacaag
tgtgtgatctggcccatcaatgtcaatgagacattcctggataacggctcgaggggcttt
gactgggaggaatacaccaacaatgtgtctaatttttacgtcattcccggtgcccctgac
cctttgctctgtggtaacagctcggatgcaggccaatgtccggagggttacacgtgcatg
aaggcaggccggaaccccaactacggttacacaagctttgatactttcagctgggctttc
ctggctttatttcgccttatgactcaggacttctgggagaacttgtatcagttgaccttg
cgagcagcaggaaaaacctacatgatcttctttgtcttggtgatcttcgtgggatccttc
tacctggtgaatctcattctggctgtggtggctatggcttatgaggagcagaaccaggcc
acgctggaggaggcagagcagaaggaggcagaatttaaggccatgttagaacagctgaag
aagcagcaggaagaagcccaggctgctgctatggtcacttcggcagggaccgtctctgaa
gatgctgtggaggatgatggtggtggggtgaggatgtctcggagctcttcggagctttcc
aagctcagttccaagagtgccaaggagcgccggaacaggaggaagaaacgcaaggacaag
gagctgtcggaaggggaggagaagtgtgacactgagaaggtgttcaagtctgagtccgag
gatggcatgaggaggaaagcgttcaggctgcccgataacaggctgggaaggaagttttcc
atcatgaaccagtctctcctcagcatccccggctcccctttcctctcccgacacaacagc
aagagcagcatcttcagctacaaagggcgattccgggacccgggctctgagaacgagttt
gctgacgatgagcacagcaccgtggaggagagcgaaggcaggagggattccctcttcatc
cccatccgcggccgggaccgccggagcagctacagcggctacagcggctacagccaaggc
agccgctcctcgcgcatcttccccaacctgcggcgcagcgtgaagcggaacagcacggtg
gattgcaatggcgtcgtgtccctcatcgggggccccccctccagcatgcccgggggacgc
cttctgcctgagggtaccactgaaatcgagatcaggaagaaacctggcggctccctcttg
gtctccatggatcaggtgaacgcatcctacggaaggaaagaccgaaccaacagtgtcatg
accgggctgacaaacacccttgtggaggagctggaagagtcccaaaggaagtgtccccct
tgctggtacaagtttgccaacacgttcctgatctgggaatgccacccgtactggatgaag
ctgaaggagatagtgaacttgattgtcatggatccatttgttgacttggccatcaccatc
tgcattgtgctgaacacgttgttcatggccatggagcaccatcccatgaccccagagttt
gaacacgtgctctccgtagggaatctggttttcactggcattttcacagcagaaatgttc
ctgaagctcattgccatggacccctactattatttccaagaaggctggaacatctttgat
ggatttattgtctccctcagtttaatggagctgggtctagcagatgtggaaggactttct
gtgctgcgatctttccgattgctgcgagtcttcaaactggccaagtcttggcccactctg
aacatgctgataaaaatcatcggtaactcagtgggtgccttggggaacttgaccttggtg
cttgccatcatcgtgttcatcttcgccgtggtggggatgcagctctttggcaaaagctac
aaggagtgtgtctgcaagatcaatccggagtgtgagctaccccgctggcacatgcacgat
ttcttccactccttccttattgtcttccgtgtgttgtgtggggaatggattgagaccatg
tgggattgtatggaagtagcgggacaggccatgtgcttgattgtcttcatgatggtcatg
gtcatcggcaacttagtggtgctgaacctcttcttagccttgctcctgagctccttcagc
gctgacaacttggcagcaaccgatgatgatggggagatgaacaacctgcagatctctgtt
atccgcatcaagaagggcattgcctggatcaaggcaaaagtgcgtgagttcatgcaggct
catttcaagcagagggaggcagatgaggtcaaacccttggatgagttgtatgacaagaag
gtaaactgcatcgctaaccacacaggggctgatatcaacagagacattgattatcagaag
aatggcaatggcaccacaagtggaattgggagcagtgtggagaagtacataatagatgaa
gatcacatgtccttcatcaataaccccaatctcactgtccgggtacccattgctgtaggt
gaatcggactttgaaaatcacaacacagaagatttcagcagtgatacagatcctgatggc
agcaaagagaaactggatgaaaccagctcctctgaaggtagcaccattgacatcaagcct
gaagtggaagaagtccctgtggaggcaccagaggagtatctggaccccgatgcttgcttc
acagaagggtgcacgcagcgctgcaagtgttgccaggtcaatattgaggaggggctgggg
aagtcgtggtggaccttgaggaagacttgtttcctcatcgtggaacataactggtttgag
accttcatcatcttcatgatcctcctgagcagcggtgctctggcgtttgaggatatttac
atagaacagaggaaaaccatccggaccatcctggaatacgcagacaaggtcttcacgtac
atcttcatcctggagatgttgctgaagtggtgtgcttatggattcgtcaagttcttcacc
aacgcctggtgctggctggatttcctcattgtggctgtctctttagtcagccttatagct
aatgccctgggctactcggaactaggtgccataaagtcccttaggacactaagagctttg
aggcctttaagagcgttgtcccgatttgaggggatgagggtggttgtcaacgccttggtt
ggcgctatcccttccattatgaatgtgttgttggtctgccttatcttctggctgattttc
agcattatgggggttaacctgtttgctgggaagtatcattactgctttaatgaaacagct
gaggagcgctttgacatagatattgttaacaacaagacagactgcgaggcgctgatgcca
cccaactccaccgagatccgatggaagaacgtcaaaatcaacttcgacaacgttggcgca
ggatatctggctcttctgcaggtggctactttcaagggctggatggacatcatgtatgca
gcagtagattccagaaagcaagaagagcaacccaagtacgaggacaacatttacatgtac
atctatttcgttatcttcattatctttggctcctttttcaccctcaacttgttcattggt
gtcatcattgacaacttcaatcaacaaaagaaaaagtttggaggtcaagatattttcatg
actgaagaacagaagaaatattataatgccatgaaaaaactgggctcaaagaagcctcag
aaacccattcctcgacctctgaaccgcattcaaggagctgtctttgactttgtcactcag
caagcatttgacatagtcatcatgatgctcatttgcctcaacatggtcaccatgatggtg
gagacagacacacaaagcaagcagatggaggacatcctttactggatcaacctggtgttt
gtcatcttcttcacctgtgagtgtgtgctgaagatgttcgctttgcggcactattatttc
accatcgggtggaacatttttgacttcgtggttgtgattctgtccatcgtgggaatgttc
ctggctgaaatcatcgagaagtactttgtgtcacccactctcttccgagtcatccgactg
gctcgcattggacgtatcctgcgcttgatcaaaggagccaaaggaatccgcaccttgctt
tttgccttaatgatgtccttgcctgccttgttcaacattggcctcttgctcttcttggtc
atgttcatcttctccatctttggcatgtcaaactttgcctacgtcaagcatgaggctggc
atagatgatatgttcaactttgagacctttggcaacagcatgatctgcttgttccagatc
accacatccgctggctgggatggcctgctgctgcccatcctcaaccggcctcctgactgc
gacctagacaaggagcaccccgggagtggttttaagggggattgtgggaacccttctgtg
gggatctttttctttgtgagttacatcatcatctccttcctgattgtggtcaacatgtac
attgccatcatcctggagaacttcagcgtggccacggaagagagtgcggacccgctaagt
gaggatgactttgagaccttctatgagatctgggagaagtttgaccccgatgccacccag
ttcatagagtacagcaagctcgcagactttgctgatgctttggaacatcctctccgcgtc
ccaaaacccaacaccatcgaactcattgccatggacctgcctatggtaagtggagacagg
atccactgtttagacatcctgtttgccttcactaaacgtgtcctgggggacagtggggag
ctggatatactcagacaacagatggaggagagatttgtggcatccaacccttccaaagtg
tcttatgagcctatcacaaccacgctgcggaggaagcaggaagaggtttcagcggtggtt
atccagagggcttacagggctcgcttagcacgacggggcttcatcagccgaaggcccgta
cccacaaagctggaaaacgggggagcaaacagggagaagaaggaggggaccccatcgacc
gcatccctcccgtcgtacgacagcgtaaccaaacctgagaaggagaagcagcaacgggca
gaggaggggagacgggaaagagccaagaggcccaaagacgtcagggaatccaagtgttga
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integrated database retrieval system
