Pseudonocardia sp. EC080619-01: AD017_18695
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Entry
AD017_18695 CDS
T04234
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pecq
Pseudonocardia sp. EC080619-01
Pathway
pecq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pecq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AD017_18695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pecq03021
]
AD017_18695
03019 Messenger RNA biogenesis [BR:
pecq03019
]
AD017_18695
Transcription machinery [BR:
pecq03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AD017_18695
Messenger RNA biogenesis [BR:
pecq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AD017_18695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
Spore_III_AA
AAA_22
AAA_25
NACHT
Motif
Other DBs
NCBI-ProteinID:
ALL82712
LinkDB
All DBs
Position
3996193..3998436
Genome browser
AA seq
747 aa
AA seq
DB search
MSETDLAGTGTASNEAAPRRRGGLSGMVLAELRQLATELNVPDISGMRKGDLIAAIKERQ
GGAAAPARKSRSKAGSDGAETPQLPLGDTGADTTAPAANGSGGAAKPAATEEAPAPRTRR
RRAATRPAGAPESAAEPADAPASTPAEAAPVTPAAEAVKALTAESAPAEAPATTDREPKT
GDDRNDDGQDGGGRRARTRRRGGQGGDDAPRDGGRDGQKDSGQKDSGQKDSGQKDPGEKD
QGRKDAGQRDAGQRDAQSDSGSDDGRDGGRGRNRNDGGNDRNNDRNNDNGRGGNDRNDNG
RGGRNRNDDNDGGRNNRNRNRNDNNDDLDDDGDGRGRRGRRFRDRRRGRDRERTGGGGGN
VDTEIRDDDVLLPVAGIVDILDNYAFVRTTGYLSGPTDVYVSMSMVRKNGLRRGDAITGA
VRQPREGEQQRQKFNPLVRVDTINGRDPESARQRAEFTKLTPLYPNERLRLETDPTQLTT
RVIDLVMPVGKGQRALIVSPPKAGKTTIMQNIANAITTNNPECHLMVVLVDERPEEVTDM
QRSVKGEVIASTFDRPPSDHTTVAELSIERAKRLVEMGHDVVVLLDNITRLGRAYNLAAP
ASGRILSGGVDSTALYPPKRFLGAARNIEDGGSLTIFATALVETGSTMDTVIFEEFKGTG
NAELKLDRKIADKRVFPAIDVGDSGTRKEELLMSPDEHAVMVKLRRVLSALDDQQAIDLV
LDRLKKTKTNIEFLMQVAKNAPGKDED
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgagaccgatctcgccggtaccgggaccgcgtcgaacgaggcggcgccccgccgt
cgcggtggcctgtccggcatggtgctggccgagctgcgtcagctggccaccgagctgaac
gtcccggacatctccggtatgcggaagggcgatctgatcgccgcgatcaaggagcgtcag
ggcggcgcggccgcgccggcgcgcaagtcgcggtcgaaggccggttccgacggcgccgag
acgccgcagctccccctcggcgacaccggtgcggacaccaccgcgcccgccgccaacggc
tccggtggtgcggcgaagcccgccgccaccgaggaggcccccgcgccgcgcacccgccgc
cgtcgtgcggcgacccggcccgccggtgcccccgagtcggctgccgagccggccgacgcc
cccgcgagcacgcccgccgaggccgctcccgtgacgccggccgccgaggccgtgaaggcc
ctgaccgccgagagcgctccggccgaggcccccgccacgacggaccgcgagccgaagacg
ggcgacgaccgcaacgacgacggccaggacggcggcggacgccgtgcccgcacccggcgc
cgcggcggccagggtggcgacgacgccccgcgcgacggcggccgggacggccagaaggac
tccggccagaaggactccggccagaaggactccggccagaaggacccgggcgagaaggac
cagggccggaaggacgcgggccagcgcgacgccggtcagcgcgacgcgcagtccgactcc
ggttccgacgacggccgtgacggcggccgcggccgcaaccgcaacgacggtggcaacgac
cgcaacaacgaccgcaacaacgacaacggccgcggcggcaacgaccgcaacgacaacggc
cggggcggtcgcaaccgcaacgacgacaacgacggcgggcggaacaaccgcaaccgcaac
cggaacgacaacaacgacgacctggacgacgacggcgacggccgcggccgtcgcgggcgc
cgcttccgggaccgtcgccggggccgggaccgcgagcgcaccggcgggggcggcggcaac
gtcgacaccgagatccgcgacgacgacgtcctgctgccggtcgccggcatcgtcgacatc
ctggacaactacgcgttcgtgcggaccaccggctacctgtccggcccgaccgacgtctac
gtctcgatgtcgatggtgcgcaagaacggcctgcgccgcggtgacgcgatcaccggtgcg
gtccgccagccccgcgagggcgagcagcagcgccagaagttcaacccgctggtgcgggtc
gacaccatcaacggccgcgaccccgagtccgcgcgccagcgtgccgagttcaccaagctg
accccgctctacccgaacgagcggctccgcctggagaccgacccgacccagctcaccacc
cgggtcatcgacctggtgatgccggtcggcaaggggcagcgcgccctgatcgtgtcgccg
ccgaaggcgggcaagacgacgatcatgcagaacatcgcgaacgcgatcacgacgaacaac
cccgagtgccacctcatggtcgtcctcgtcgacgagcggccggaggaggtcaccgacatg
cagcggtcggtgaagggcgaggtcatcgcctcgaccttcgaccgcccgccgtcggaccac
accaccgtcgcggagctctccatcgagcgggcgaagcgcctggtggagatggggcacgac
gtcgtcgtcctgctggacaacatcacccgtctcggccgcgcctacaacctggccgcgccg
gcgtcgggccggatcctctccggtggtgtcgactcgaccgcgctgtacccgccgaagcgc
ttcctgggcgccgcgcggaacatcgaggacggcggctcgctgacgatcttcgcgaccgcg
ctggtcgagaccgggtccacgatggacacggtgatcttcgaggagttcaagggcaccggc
aacgccgagctcaagctggaccgcaagatcgccgacaagcgcgtcttcccggcgatcgac
gtcggcgacagcggcacccgcaaggaagagctgctcatgtcgccggacgagcacgcggtg
atggtcaagctccgtcgcgtcctctccgcgctggacgaccagcaggccatcgacctggtg
ctcgaccggctcaagaagaccaagaccaacatcgagttcctgatgcaggtcgcgaagaac
gcgcccggcaaggacgaggactag
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