Pseudonocardia sp. EC080619-01: AD017_21145
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Entry
AD017_21145 CDS
T04234
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pecq
Pseudonocardia sp. EC080619-01
Pathway
pecq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pecq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AD017_21145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pecq03019
]
AD017_21145
03400 DNA repair and recombination proteins [BR:
pecq03400
]
AD017_21145
Enzymes [BR:
pecq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AD017_21145
Messenger RNA biogenesis [BR:
pecq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AD017_21145
DNA repair and recombination proteins [BR:
pecq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AD017_21145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Pribosyltran
AAA_22
SWI2_SNF2
Motif
Other DBs
NCBI-ProteinID:
ALL83062
UniProt:
A0A0P0SFD8
LinkDB
All DBs
Position
complement(4513355..4515484)
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AA seq
709 aa
AA seq
DB search
MGPVTTASETDLPGSADLRERAEAVLAQLAGDGARLREDQWTAIEALVAQHRRALVVQRT
GWGKSAVYFVATALLREQGAGPTVIVSPLLALMRNQIDAAIRSGIVAVTVNSANADEWDA
VYADIENGDVDVLLVSPERLNNPDFRDRVLPKLAASAGMLVVDEAHCVSDWGHDFRPDYR
RLRTLIAELPSGIPVLATTATANDRVVTDVSEQLGMGRDQQDTLVLRGSLDRESLRLAVV
QLPTPARRLAWLAAKLDELPGAGIVYTLTVQAADEVAEFLRERGFAVRSYSGKTDPEQRL
AAESDLQENRVKALVATSALGMGFDKPDLGFVVHLGAPASPVAYYQQIGRAGRALERAEV
VLLPGREDRDIWAYFASLAFPPEPLVRQTLGVLSEHPRSTASIETQVDLSRTRLEMLLKV
LDADGAAKRVKGGWTATGEEWVYDTERHARVNEARRAEQQAMLDYIATTECRLVFLRRQL
DDPDPTPCGRCDTCTGTVWSDDVAADGEQAAQERLSRPGIELAPRKMWPSGMADLDVPLS
GRIPPGEQAATGRAIGRLSDIGWGTRLRELLSGGDDPVPSDVLDAVVRVLAGWGWERRPV
GVVGIGSRTRPHQLDHLARRIAEIGRLPLLGTLPPAGDHPEARENSAQRLAAVWAGLDAA
ALPDLSGAGGPVLLVDDLVDSGWTMTVAARALRQAGAPEVLPLTLAVAG
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgggtcccgtgacgaccgcatcggagaccgacctgccgggtagcgccgacctgcgcgag
cgcgccgaggcggtgctcgcccagctcgccggcgacggcgcccggctgcgcgaggaccag
tggaccgcgatcgaggccctggtcgcgcagcaccgccgcgcgctcgtcgtgcagcgcacc
ggctggggcaagtcggcggtctacttcgtggcgacggcgctgctccgcgagcagggcgcc
ggccccacggtgatcgtctccccgctgctggcactgatgcgcaaccagatcgacgcggcg
atccgctccgggatcgtggcggtcacggtcaactcggccaacgccgacgagtgggacgcg
gtgtacgccgacatcgagaacggcgacgtcgacgtgctgctcgtgtcgccggagcggctc
aacaaccccgacttccgggaccgggtgctgccgaagctcgccgcgagcgccgggatgctc
gtggtcgacgaggcgcactgcgtgtccgactgggggcacgacttccggcccgactaccgc
aggctgcgcacgctgatcgccgagctgccgtccggcatcccggtgctggcgacgaccgcg
accgcgaacgaccgggtcgtcaccgacgtctcggagcagctcggcatgggccgggaccag
caggacacgctggtgctgcgcggctcgctggaccgggagtcgctgcggctggccgtggta
cagctgccgacccccgcccggcgactggcctggctggccgcgaagctcgacgagctgccc
ggcgccgggatcgtctacaccctcaccgtgcaggccgccgacgaggtggccgagttcctg
cgcgagcgcgggttcgcggtgcgctcctactccgggaagaccgatccggagcagcggctc
gccgccgagtcggacctgcaggagaaccgggtgaaggccctggtggcgacgtcggcgctg
ggcatgggcttcgacaagcccgacctgggcttcgtcgtgcacctcggcgcccccgcctcg
ccggtggcctactaccagcagatcggccgtgccgggcgcgcgctggagcgggccgaggtg
gtgctgctgcccggccgcgaggaccgcgacatctgggcctacttcgcgtcgctcgcgttc
ccgccggagccgctggtccgccagaccctcggcgtgctgtcggagcacccgcggtcgacg
gcgtcgatcgagacccaggtggatctgtcccgcacccggctggagatgctgctcaaggtg
ctcgacgccgacggcgcggcgaagcgcgtcaagggcggctggaccgccaccggggaggag
tgggtctacgacaccgagcggcacgcgcgggtgaacgaggcgcggcgcgccgagcagcag
gcgatgctcgactacatcgccaccaccgagtgccggctggtgttcctgcgccgccagctc
gacgacccggacccgaccccgtgcggccgctgcgacacctgcaccggcaccgtctggtcc
gacgacgtcgcggccgacggcgagcaggccgcgcaggagcgactgtcccggcccgggatc
gagctcgcgccgcggaagatgtggccgtccgggatggcggacctggacgtgccgctgtcc
gggcggatcccgcccggggagcaggcggcgaccggccgggcgatcgggcggctctccgac
atcggctggggcacccggctgcgcgagctgctctccggtggcgacgacccggtgccgtcg
gacgtgctcgacgccgtcgtccgggtgctcgcggggtggggctgggagcggcgccccgtc
ggtgtggtcgggatcggctcgcgcacccgaccgcaccagctcgatcacctcgcccgccgg
atcgccgagatcgggcggctgccgctgctcggcacgctgccgccggccggcgaccacccg
gaggcgcgggagaactccgcccagcggctggccgcggtgtgggcggggctggacgcggcg
gcgctgccggacctctcgggcgccgggggcccggtgctgctcgtcgacgacctcgtcgac
tccggctggacgatgacggtcgccgcgcgcgccctgcggcaggccggggcaccggaggtg
ctgcccctcacgctggcggtcgcgggctga
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