Candidatus Phaeomarinibacter ectocarpi: BN1012_Phect1644
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Entry
BN1012_Phect1644 CDS
T09856
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
pect
Candidatus Phaeomarinibacter ectocarpi
Brite
KEGG Orthology (KO) [BR:
pect00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pect03016
]
BN1012_Phect1644
Enzymes [BR:
pect01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
BN1012_Phect1644
Transfer RNA biogenesis [BR:
pect03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
BN1012_Phect1644
Prokaryotic type
BN1012_Phect1644
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB_C
TruB-C_2
DKCLD
Motif
Other DBs
NCBI-ProteinID:
CDO59858
UniProt:
X5M8Y5
LinkDB
All DBs
Position
3379234..3380196
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AA seq
320 aa
AA seq
DB search
MGRRKKGLPVSGWVVVDKPLGPTSTHVVSKVRRAFNAQKAGHAGTLDPLGSGILPVALGE
ATKTVPYLVDATKDYRFAVHWGEQRDTDDREGDVTATSDVRPTKDAILAALPKYVGEISQ
IPPKYSAIKVNGERAYDLARDGEEVELKARTVEIHDLKLIDQPSNDEAVFEMTCGKGTYV
RSLARDLAQDLGTFGHVAMLRRLRVGPFSEEDAVALDVITEFPTQIAVETAPDMGNSPPA
PDPKAPFLLPLETALDDIPALAVSGNDAARLKQGQAVLSRGRDAPIVKGTICAMLHGQPV
ALCEARQGELQPTRVFNLPS
NT seq
963 nt
NT seq
+upstream
nt +downstream
nt
atgggccgtcgcaaaaaaggcctgcctgtctctggatgggtggtggtggacaagccgctt
gggccgacctcaacccatgtggtgtcgaaggtccgtcgcgcgttcaatgcccaaaaggcg
ggccacgccggcacgctggacccgttgggctcaggcattctgccggttgcgctgggtgag
gcgaccaaaactgttccctatctggtggacgccaccaaggactaccgatttgccgtccac
tggggcgagcagcgcgacaccgatgaccgcgagggtgacgtgaccgccaccagcgatgtg
cgccccaccaaagatgccattctggccgctttgcccaaatatgtgggcgaaatcagccaa
attccgcccaaatactccgccatcaaggtcaatggcgagcgcgcctacgacctggcccgt
gacggcgaggaggtcgagctcaaggcccgcacggtcgagatccacgatctcaagctgatc
gaccagccgtccaacgacgaggctgtgtttgaaatgacctgcggaaaaggcacctatgtg
cggtccctggcgcgcgatctggcgcaggatttaggcacttttggccatgtggcgatgctg
cgccgcctgcgggtcggcccattcagcgaagaagacgctgtagcccttgatgttattacg
gaatttccaactcaaatagcggtggaaactgcgcccgatatgggcaatagtccgcccgcg
ccagaccccaaggcgccttttttattgccacttgagaccgcgctggacgacatcccggcc
ctggccgtgagtggcaatgatgcggcgcgattaaagcaaggtcaggcggttctgtcgcgt
ggacgggacgcacccatcgtcaaaggcacaatatgcgccatgcttcacgggcaacccgtt
gccctgtgtgaagcacgacaaggtgagttacagcccacgcgcgttttcaacctcccctct
tga
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